tillahoffmann
Building network models at @HarvardChanSchool with a focus on open and reproducible science. Formerly @imperial, @spotify.
Harvard T.H. Chan School of Public HealthBoston, MA
Pinned Repositories
shedding-hub
Data and statistical models for biomarker shedding.
asymmetric_kde
Density estimation using asymmetric kernels.
localscope
Restrict the scope of functions for reproducible code execution and peace of mind.
nonpoisson-dynamics
obsidian-file-include
obsidian-jupyter
shedding
Uncertainties surrounding the concentration of viral RNA fragments in the faeces of individuals infected with SARS-CoV-2 poses a major challenge for wastewater-based surveillance of Covid-19. This repository serves to collate data from quantitative studies on RNA load in faecal samples to constrain the shedding distribution.
time_series
wastewater-catchment-areas
7,537 wastewater catchment areas in the Great Britain covering more than 95% of the population.
tillahoffmann's Repositories
tillahoffmann/time_series
tillahoffmann/asymmetric_kde
Density estimation using asymmetric kernels.
tillahoffmann/universal_tensorflow_image
Develop tensorflow models with or without a GPU accelerator using the same Docker image. š„³
tillahoffmann/common
tillahoffmann/networkit
NetworKit is a growing open-source toolkit for large-scale network analysis.
tillahoffmann/util
Code snippets for statistics and machine learning.
tillahoffmann/variational_bayes
tillahoffmann/bazel-itertools
Functions for efficient looping matching python's itertools.
tillahoffmann/beaver
tillahoffmann/cygraph
tillahoffmann/cython_example
tillahoffmann/density
tillahoffmann/docker_interface
:whale: Declarative interface for building images and running commands in containers using Docker.
tillahoffmann/gitref
tillahoffmann/kernels
tillahoffmann/macrodynamics
tillahoffmann/mathcord
Typeset equations in Discord messages.
tillahoffmann/matplotlib
matplotlib: plotting with Python
tillahoffmann/networkdata
Collection of network data.
tillahoffmann/numpy
Numpy main repository
tillahoffmann/numpy_system_load
tillahoffmann/obsidian-bibliography-archive
tillahoffmann/obsidian-customisation
tillahoffmann/obsidian-embedded-images
Hide base64-encoded images in the editor mode.
tillahoffmann/pip-tools
A set of tools to keep your pinned Python dependencies fresh.
tillahoffmann/pystan
PyStan, a Python interface to Stan, a platform for statistical modeling. Documentation: https://pystan.readthedocs.io
tillahoffmann/pytest-bootstrap
tillahoffmann/scHPF
Single-cell Hierarchical Poisson Factorization
tillahoffmann/scipy
Scipy library main repository
tillahoffmann/sciutils
A collection of functionality useful for scientific computing.