Pinned Repositories
deepnano-blitz
Very fast ONT basecaller
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
flappie
Flip-flop basecaller for Oxford Nanopore reads
taiyaki
Training models for basecalling Oxford Nanopore reads
pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
deepnano-blitz
Very fast ONT basecaller
fast5_research
Fast5 API provided by ONT Research
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
Theano
Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation.
tmassingham-ont's Repositories
tmassingham-ont/deepnano-blitz
Very fast ONT basecaller
tmassingham-ont/fast5_research
Fast5 API provided by ONT Research
tmassingham-ont/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
tmassingham-ont/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
tmassingham-ont/Theano
Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation.