tomasbruna
Genome Data Scientist at JGI
Joint Genome Institute, Lawrence Berkeley National LaboratoryBerkeley, CA
tomasbruna's Stars
lewish/asciiflow
ASCIIFlow
Gaius-Augustus/BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
Benson-Genomics-Lab/TRF
Tandem Repeats Finder: a program to analyze DNA sequences
Gaius-Augustus/GALBA
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
ncbi/rapt
Read Assembly and Annotation Pipeline Tool
gatech-genemark/ProtHint
Protein hint generation pipeline for gene finding in eukaryotic genomes
Gaius-Augustus/TSEBRA
TSEBRA: Transcript Selector for BRAKER
Gaius-Augustus/clamsa
ClaMSA (Classify Multiple Sequence Alignments).
tomasbruna/miniprothint
Miniprothint selects a set of reliable gene prediction hints from miniprot alignments scored by miniprot boundary scorer.