chromosomes

There are 29 repositories under chromosomes topic.

  • apriha/lineage

    tools for genetic genealogy and the analysis of consumer DNA test results

    Language:Python16594426

  • apriha/snps

    tools for reading, writing, merging, and remapping SNPs

    Language:Python10345919

  • open2c/polychrom

    Chromosome polymer simulations and in silico capture experiments

    Language:Python4792116

  • estebanpw/chromeister

    A dotplot generator for large chromosomes

    Language:C404224

  • yulvil/chromosome-browser

    Visualize your DNA segments from gedmatch, ftdna, myheritage, 23andme

    Language:HTML22412

  • lukasuz/Banding-Pattern-Extraction

    Banding pattern extraction and banding pattern segmentation mask generation for stained banded chromosome images.

    Language:Python15206

  • marccasian/KaryML-Framework

    Machine Learning (ML) research within medicine and healthcare represents one of the most challenging domains for both engineers and medical specialists. One of the most desired tasks to be accomplished using ML applications is represented by disease detection. A good example of such a task is the detection of genetic abnormalities like Down syndrome, Klinefelter syndrome or Hemophilia. Usually, clinicians are doing chromosome analysis using the karyotype to detect such disorders. The main contribution of the current article consists of introducing a new approach called KaryML Framework, which is extending our previous research: KarySOM: An Unsupervised Learning based Approach for Human Karyotyping using Self-Organizing Maps . Our major goal is to provide a new method for an automated karyotyping system using unsupervised techniques. Additionally, we provide computational methods for chromosome feature extraction and to develop an intelligent system designed to aid clinicians during the karyotyping process.

    Language:Python14130

  • monarch-initiative/monochrom

    Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species

    Language:Python135222

  • rraadd88/chrov

    🧬Chromosome Visualizations

    Language:Python11300
  • GeneticAlgorithm

    AliMarouf97/GeneticAlgorithm

    The library provides a general genetic algorithm. It is simple, easy to use, and very fast. All you need to do is to define the fitness function and its variables. There are many examples of how to deal with classic genetic algorithms problems.

    Language:C++7302
  • napari-kics

    mpicbg-csbd/napari-kics

    A plugin to estimate chromosome sizes from karyotype images.

    Language:Python61320

  • lpryszcz/HiCembler

    Assembler for HiC data

    Language:Python5320

  • a-thind/ideogram

    HTML widget for displaying IBD segments in an interactive ideogram using Ideogram.js

    Language:R4300

  • egonw/wikipathways-chromosomes

    Mapping WikiPathways to chromosomes

    Language:HTML3502

  • keivan-amini/Node2VecHiC

    Node2Vec and PCA on Hi-C matrices for detecting chromosome translocations.

    Language:Jupyter Notebook3100

  • jnarayan81/ambigram

    Evolutionary Chromosome Breakpoints Validator

    Language:Perl2102

  • nthomasCUBE/Gexplora

    Gexplora - user-interface to analyse genomic elements along chromosomes

    Language:Python2160

  • Serg-Norseman/GKGenetix

    Simple genetic data analysis for GEDKeeper

    Language:C#2301

  • christopher-hakkaart/GenomeFiles

    Meta-chromosome genome files and scripts

    1100

  • PetePrattis/Chimeric-Alignment-problem

    A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.

    Language:Python120

  • PetePrattis/chromosome-last-nucleotide-game

    A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.

    Language:Python120

  • PetePrattis/chromosome-last-random-nucleotide-game

    A Python script that implements a two player strategic game with two sequences of length n and m nucleotides respectively. At each Round of the game a player can remove a random number of nucleotides from one sequence or the same number of nucleotides from both sequences. The player who removes the last nucleotide wins.

    Language:Python120

  • Shchetinnikov/tRNA_like_sequences

    Research work on the search for tRNA-like sequences in the human genome. National Research Nuclear University MEPhI (Moscow Engineering Physics Institute)

    Language:C++1100

  • vargasrichards/gmap-modified

    An R package to visualize genetic maps.

    Language:R10

  • pepprseed/datadraw-examples

    collection of examples / demos for python 'datadraw' package, organized as a flask app

    Language:Python0100

  • semboko/RadialProfile

    Measures the integral radial density of a fluorescent signal in a nucleus of any shape

    Language:Python0100

  • tvmendonca/iRheoCStretch

    An app to extract complex viscoelasticity from optical tweezer stretch-strain rheology measurements of chromosomes and other single molecules

    Language:MATLAB00

  • PetePrattis/sequence-global-alignment-with-unknown-nucleotides

    A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.

    Language:Python202

  • RRafiee/MuTect1

    Language:R10