chromosomes
There are 28 repositories under chromosomes topic.
apriha/lineage
tools for genetic genealogy and the analysis of consumer DNA test results
apriha/snps
tools for reading, writing, merging, and remapping SNPs
open2c/polychrom
Chromosome polymer simulations and in silico capture experiments
estebanpw/chromeister
A dotplot generator for large chromosomes
yulvil/chromosome-browser
Visualize your DNA segments from gedmatch, ftdna, myheritage, 23andme
lukasuz/Banding-Pattern-Extraction
Banding pattern extraction and banding pattern segmentation mask generation for stained banded chromosome images.
marccasian/KaryML-Framework
Machine Learning (ML) research within medicine and healthcare represents one of the most challenging domains for both engineers and medical specialists. One of the most desired tasks to be accomplished using ML applications is represented by disease detection. A good example of such a task is the detection of genetic abnormalities like Down syndrome, Klinefelter syndrome or Hemophilia. Usually, clinicians are doing chromosome analysis using the karyotype to detect such disorders. The main contribution of the current article consists of introducing a new approach called KaryML Framework, which is extending our previous research: KarySOM: An Unsupervised Learning based Approach for Human Karyotyping using Self-Organizing Maps . Our major goal is to provide a new method for an automated karyotyping system using unsupervised techniques. Additionally, we provide computational methods for chromosome feature extraction and to develop an intelligent system designed to aid clinicians during the karyotyping process.
monarch-initiative/monochrom
Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
AliMarouf97/GeneticAlgorithm
The library provides a general genetic algorithm. It is simple, easy to use, and very fast. All you need to do is to define the fitness function and its variables. There are many examples of how to deal with classic genetic algorithms problems.
rraadd88/chrov
🧬Chromosome Visualizations
mpicbg-csbd/napari-kics
A plugin to estimate chromosome sizes from karyotype images.
a-thind/ideogram
HTML widget for displaying IBD segments in an interactive ideogram using Ideogram.js
lpryszcz/HiCembler
Assembler for HiC data
egonw/wikipathways-chromosomes
Mapping WikiPathways to chromosomes
keivan-amini/Node2VecHiC
Node2Vec and PCA on Hi-C matrices for detecting chromosome translocations.
jnarayan81/ambigram
Evolutionary Chromosome Breakpoints Validator
nthomasCUBE/Gexplora
Gexplora - user-interface to analyse genomic elements along chromosomes
Serg-Norseman/GKGenetix
Simple genetic data analysis for GEDKeeper
christopher-hakkaart/GenomeFiles
Meta-chromosome genome files and scripts
PetePrattis/Chimeric-Alignment-problem
A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.
PetePrattis/chromosome-last-nucleotide-game
A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.
PetePrattis/chromosome-last-random-nucleotide-game
A Python script that implements a two player strategic game with two sequences of length n and m nucleotides respectively. At each Round of the game a player can remove a random number of nucleotides from one sequence or the same number of nucleotides from both sequences. The player who removes the last nucleotide wins.
Shchetinnikov/tRNA_like_sequences
Research work on the search for tRNA-like sequences in the human genome. National Research Nuclear University MEPhI (Moscow Engineering Physics Institute)
vargasrichards/gmap-modified
An R package to visualize genetic maps.
pepprseed/datadraw-examples
collection of examples / demos for python 'datadraw' package, organized as a flask app
semboko/RadialProfile
Measures the integral radial density of a fluorescent signal in a nucleus of any shape
PetePrattis/sequence-global-alignment-with-unknown-nucleotides
A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.