cytometry
There are 57 repositories under cytometry topic.
whitews/FlowKit
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
burtonrj/CytoPy
A data-centric flow/mass cytometry automated analysis framework
whitews/FlowIO
A Python library for reading and writing Flow Cytometry Standard (FCS) files
tidyomics/tidyomics
Easily install and load packages from the tidyomcis ecosystem
MICS-Lab/scyan
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
LCSB-BioCore/GigaSOM.jl
Huge-scale, high-performance flow cytometry clustering in Julia
exaexa/EmbedSOM
Fast embedding ot multidimensional datasets, great for cytometry data
nf-core/imcyto
Image Mass Cytometry analysis pipeline
keyes-timothy/tidytof
An R package for analyzing high-dimensional cytometry data using the tidyverse.
ghar1821/Chronoclust
A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.
whitews/FlowUtils
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
LogIN-/fluprint
Import script needed to build FluPRINT database from source :computer:
gszep/FlowAtlas.jl
an interactive explorer for flow cytometry data
phipsonlab/SuperCellCyto
SuperCell for Cytometry data
Terkild/CITE-seq_optimization
Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
BodenmillerGroup/histocat-web
Histology Topography Cytometry Analysis Toolbox (histoCAT) for Web.
casanova-lab/iMUBAC
Integration of multi-batch cytometry datasets
ghar1821/TrackSOM
Temporal clustering and tracking algorithm which fuses on FlowSOM and ChronoClust, specifically designed for analysing temporal cytometry data
TAPE-Lab/CyGNAL
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
CIDARLAB/fpSelection
Algorithms for the selection of fluorescent reporters.
luglilab/Cytophenograph
Pipeline for flow cytometry anlaysis
ZELLMECHANIK-DRESDEN/ShapeOut
Shape-Out has been superseded by Shape-Out 2.
gitdemont/IFC
Tools for Imaging Flow Cytometry
gitdemont/IFCshiny
An R Interactive Shiny Application for the Analysis of Imaging and Conventional Flow Cytometry
matei-ionita/HiTMapper
An R package for visualization and relational analysis of cell states, based on the Mapper algorithm from topological data analysis.
gitdemont/IFCip
Image Processing tools for Imaging Flow Cytometry
i-cyto/cytoBatchNorm
An R package to apply Batch Normalization to cytometry
niaid/HDStIM
HDStIM: High Dimensional Stimulation Immune Mapping
gitdemont/IFCdata
Data for Imaging Flow Cytometry
JimboMahoney/CytobankGraphs
R Script for reading CyTOF or flow cytometry data (FCS) and generating plots like Cytobank
klavinslab/cowfish
Cowfish: an Aquarium cytometry results analyzing package in Python
lance-waller-lab/gateR
Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Landysh/fleur.nodes
Bringing Flow Cytometry into the realm of KNIME.
scivision/cytometry-ratios
Open source static cytometry, initially targeting P. falciparum malaria
PaulRegnier/PICAFlow
PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.
wwu-mmll/gatenet
Official implementation of GateNet