whitews/FlowKit

Issues

• Rename gate bug when GatingStrategy has more than 1 gate with same name

  #231 opened a month ago by catcd
  3

• FACSDiscover S8 Cellview uses 32 bit encoding -> problem with transforms that assume 18 bit encoding by default

  #232 opened a month ago by samdepaauw
  4

• Rename Workspace kwarg `ignore_missing_files` to `load_missing_file_data`

  #230 opened 2 months ago by whitews
  0

• __init__() got multiple values for argument 'param_t'

  #226 opened 2 months ago by tomyputw
  9

• failed to load external entity

  #227 opened 2 months ago by tomyputw
  2

• Remove a Custom Gate from GatingStrategy

  #221 opened 2 months ago by catcd
  3

• GateTreeError when loading a FlowJo workspace with "." gate name

  #220 opened 2 months ago by whitews
  0

• Support renaming gates

  #219 opened 3 months ago by whitews
  0

• Move generate_biex_lut function to FlowUtils

  #201 opened 7 months ago by whitews
  0

• Add `event_mask` to `Sample.get_events`

  #218 opened 3 months ago by whitews
  0

• Workspace not loading Boolean gates

  #179 opened 3 months ago by ldrufuca
  3

• Scatter plots error with few points

  #197 opened 4 months ago by paulmaschhoff
  1

• Load custom keywords from FlowJo .wsp file

  #210 opened 4 months ago by hclnyrk
  3

• Add `source` kwarg to `Workspace.get_gate_events`

  #196 opened 4 months ago by whitews
  3

• Automatic gating using clustering techniques

  #216 opened 4 months ago by benweinberg89
  1

• Support renaming a channel in Sample class

  #198 opened 4 months ago by whitews
  0

• Referencing transform class via ID in a Dimensions class throws key error when calling .gate_sample()

  #215 opened 5 months ago by Deerer99
  2

• Clustering Comparison: Leiden vs Louvain

  #207 opened 6 months ago by Jonas3wu
  7

• Typo in the attribute name for "Matrix" object

  #206 opened 6 months ago by okolupaev
  2

• Remove `id` attribute from Matrix class

  #199 opened 7 months ago by whitews
  0

• Allow equality comparison for Matrix instances

  #200 opened 7 months ago by whitews
  0

• Add utility function to generate a set of transforms for a sample

  #162 opened 7 months ago by whitews
  0

• BiexTransform and MFI values

  #195 opened 8 months ago by nettilor
  7

• Remove `id` attribute from Transform classes

  #191 opened 8 months ago by whitews
  0

• LinAlgError while analysing session

  #178 opened 8 months ago by ayilmaz52
  2

• Importing FCS files into Flowkit

  #193 opened 8 months ago by tinsleykw
  1

• Non-rectangular gates introduce errors in get_analysis_report()

  #194 opened 8 months ago by nettilor
  2

• Is `null_channels` implemented in `Sample`?

  #175 opened 9 months ago by laserson
  2

• FlowKit should be able to automatically find FCS files based on `uri`s in .wsp files

  #166 opened 9 months ago by hbhargava7
  9

• Change Workspace.summary to have samples as rows (not groups)

  #160 opened 2 years ago by whitews
  1

• Convert custom colormap from matplotlib to bokeh palette

  #161 opened 9 months ago by whitews
  1

• `plot_scatter_matrix` should plot a histogram along the diagonal

  #169 opened 9 months ago by laserson
  1

• Pandas 2.0+

  #177 opened 9 months ago by fu
  3

• "have you run analyze samples?"

  #186 opened 9 months ago by Francescodotta
  1

• float to string convertion error in time_step

  #185 opened 9 months ago by blabarthe1
  1

• Importing Flowkit causes Bus Error

  #187 opened 10 months ago by AkshatJain9
  8

• Question to wsp transforms

  #184 opened a year ago by Tianmaru
  4

• FCS 3.2 support

  #182 opened a year ago by gabrielpan147
  3

• 0.9.3 setup.py file missing comma in req

  #183 opened a year ago by AliceAlmazan
  2

• highlight_indices variable not implemented in plot_scatter()?

  #176 opened a year ago by AliceAlmazan
  2

• Cannot Install flowkit

  #171 opened a year ago by gernophil
  2

• Counts between analyze_sample and FlowJo output are different

  #173 opened a year ago by mgratigny
  5

• `Sample` initialization may cause samples to have identifier of `' '`

  #163 opened a year ago by vahvero
  2

• Shared matrices are not loaded in flowkit

  #165 opened a year ago by arogozhnikov
  3

• deprecated function referenced in tutorial

  #164 opened 2 years ago by VitaminBrad
  0

• Remove "GML" transforms

  #159 opened 2 years ago by whitews
  0

• Workspace `summary` method can fail when some samples have no gates

  #155 opened 2 years ago by milesdai
  5

• Session.export_wsp() fails for biex transform

  #158 opened 2 years ago by whitews
  0

• Community Input - Subscribe to get notifications

  #149 opened 2 years ago by whitews
  1

• Update histogram plot to allow limiting data range

  #150 opened 2 years ago by whitews
  0