cytoscape
There are 114 repositories under cytoscape topic.
duo-labs/cloudmapper
CloudMapper helps you analyze your Amazon Web Services (AWS) environments.
plotly/dash-cytoscape
Interactive network visualization in Python and Dash, powered by Cytoscape.js
cytoscape/ipycytoscape
A Cytoscape Jupyter widget
Or3stis/apparatus
A graphical security analysis tool for IoT networks
chatox/networks-science-course
A course on Network Science, including network formation models, structural patterns, and dynamic processes.
cytoscape/py4cytoscape
Python library for calling Cytoscape Automation via CyREST
lmangani/gun-scape
GunDB Cytoscape Graph Visualizer + Live Editor
PathwayCommons/cytoscape-sbgn-stylesheet
View biological networks via Cytoscape.js and sbgn-ml
fslaborg/Cytoscape.NET
.NET interface for Cytoscape.js written in F#
BaderLab/EnrichmentMapApp
The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
lomska/Visualizing-Global-Trade-Networks
Python script that visualizes international commodity trade networks quickly and beautifully
ebeshero/DHClass-Hub
a repository to help introduce and orient students to the GitHub collaboration environment, and to support DH classes.
upsetjs/cytoscape.js-bubblesets
Cytoscape.js Bubblesets plugin
Abhi5h3k/graphml-viewer
Quick and simple web based solution to visualize GraphMl network diagrams
corwur/cytoscapeneo4j
Cytoscape plugin for neo4j
aszilagyi/tabnetviz
Table-based network visualizer
michaelbushe/cytoscape-angular
Angular component for Ctyoscape graphs.
peng-ye/MetaPGN
A pipeline for construction and graphical visualization of annotated pangenome networks.
9von10/ngx-cytoscapejs
Angular 13+ Cytoscape.js Wrapper
jespersm/cytoscape-gremlin
Cytoscape App for connecting to a Gremlin/TinkerPop Server
leovan/cytoscape-manual
Cytoscape 中文用户手册 | Cytoscape User Manual (Chinese Version)
matthiaskoenig/cy3sbml
cy3sbml: SBML for Cytoscape 3
faridfr/Optimizing_Finite_Automata
PHP script with web interface that can optimize & draw your finite automata
smith-chem-wisc/ProteoformSuite
Construction, quantification, and visualization of proteoform families
hanzhi713/Discrete-Math-Tools
Implementation and visualization of some number theory and graph theory algorithms
kristiyanto/GUIdock
Graphical GUI for Docker (Bioconductor, R, Cytoscape, NetworkBMA)
dennishnf/project-arxiv-citation-network
This project involved the analysis of the ArXiv citation network.
picorana/sparqling
Visual tool for SPARQL queries on graphol graphs
iVis-at-Bilkent/cytoscape.js-layout-service
Web-service on cytoscape.js to layout graphs
BaderLab/cy3d-impl
3D Graph Renderer for Cytoscape using OpenGL
jhk0530/shinyCyJS
cytoscape.js R binding library for shiny
weso/rdfshape-client
Web client for RDFShape API with human-friendly validations and visualizations.
BaderLab/AutoAnnotateApp
The AutoAnnotate Cytoscape App finds clusters of nodes and visually annotates them with semantic labels and groups.
mrjoh3/cytoscape
An R HTMLWidget wrapper for Cytoscape.js
proteomicsyates/ProteinClusterQuant
Protein Cluster Quant is a Java software for the analysis of complex proteomics samples (quantitative or not). It helps to reduce the redundancy of the peptide-to-protein relationship and to visualize the results in a bipartite network (Cytoscape).
geneontology/gocam-sif-pyexport
Export GO-CAMs to SIF (Python)