individual-based-modelling

mlange-42/arche

Arche -- Archetype-based Entity Component System (ECS) for Go.

ropensci/nlrx

nlrx NetLogo R

ArroyoAndre/covidsimulation

Covid Epidemics Simulation with Simpy

mrc-ide/individual

R Package for individual based epidemiological models

DiODeProject/MuMoT

Multiscale Modelling Tool - mathematical modelling without the maths

mlange-42/arche-model

Everything you need to rapidly build a model with the Arche Entity Component System (ECS).

DEMENT-Model/DEMENTpy

A spatially explicit trait- and individual-based microbial systems modelling framework

UCL/TLOmodel

Epidemiology modelling framework for the Thanzi la Onse project

jacobnabe/DEPONS

DEPONS model: Simulating effects of disturbances on the North Sea harbour porpoise population

rjzupkoii/PSU-CIDD-Malaria-Simulation

Spatial individual-based model of malaria with a focus on drug resistance evolution.

berndpanassiti/HostSwitch

HostSwitch: An R Package to simulate host switching by a parasite

mlange-42/arche-pixel

OpenGL graphics and plots for the Arche Entity Component System (ECS).

marcosci/mini_taskview_ibm

Taskview for all IBM related 📦 packages in the R universe

rosemckeon/ploidy

How does disturbance on a landscape affect the establishment of new polyploid plant species?

pratikunterwegs/pathomove

Individual-based model to simulate the evolution of movement strategies under risk of pathogen spread.

ap-browning/scratchIBM

Supplementary material for "Identifying density-dependent interactions in collective cell behaviour"

babak2/WHD

cornejotux/MPA-and-fish-movement

Source code of the model used in Cornejo-Donoso, J., Einarsson, B., Birnir, B., Gaines, S.D. (2017) Effects of fish movement assumptions on the design of a marine protected area to protect an overfished stock. PlosONE 12(10): e.0186309 https://doi.org/10.1371/journal.pone.0186309

dgoto2/SEIBMEarlyLife

A spatially explicit individual-based model for fish early life histories

jacobnabe/PorpoiseModel

Individual-based model for assessing the effects by-catch, ship noise etc. on harbour porpoises in the inner Danish waters

johannes-lee/SIRD-vaccination

Python individual-level SIRD model for studying vaccination prioritization

RowanDurrant/DFTD

Individual-based metapopulation model of devil facial tumour disease.

trondkr/Glomma_particles

Repository for developing sediment module for OpenDrift for modeling flow of particles in Glomma

bonilab/malariaibm-spatial-Rwanda-561H

Complete source code and intermediary files to accompany the manuscript published in Nature Medicine.

charlesrocabert/puutools

Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.

dgoto2/SEIBMFoodWeb

A spatially explicit individual-based food web model for a large ecosystem

dgoto2/SEIBMRiverFish

A spatially explicit (1D) individual-based model for large river fish

FelixNoessler/Buffers-or-corridors-for-great-crested-newts

Individual based-model to determine which management option (buffers or corridors between ponds) is better for promoting the population of newts.

FelixNoessler/Individuals-based-modelling-with-RangeShiftR

Individual-based model of a theoretical reintroduction of wild boars in France

Kanchana-Bandara/PASCAL-v4.0

Pan-Arctic Behavioral and Life-history Simulator for Calanus: a 3D super-individual-based model.

olledejong/DAISIEsims

Mini project (5ECTS) as part of the MSc Biology (University of Groningen), aiming to increase the efficeincy and speed of DAISIE model simulations.

wtennant/arbo_gpu_fit

Fitting a stochastic individual based model for arboviral disease.

bonilab/malariaibm-spatial-BurkinaFaso-2021

Complete source code and intermediary files to accompany the manuscript published in PLOS Global Public Health.

klanting/UA-2024-Summer-Modelling-Infectious-Disease-Case-Study

Case Study expanding the infectious disease modelling in R tutorial

mcwimm/RootGraftsMatter

Data and code for analysis presented in Wimmler et al. (2022)