mathematical-biology
There are 49 repositories under mathematical-biology topic.
Chaste/Chaste
Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
JuliaEpi/MathEpiDeepLearning
Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.
iliailmer/ParameterEstimation.jl
ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.
pmontalb/TuringPatterns
C++/CUDA Implementation of the most popular reaction-diffusion dynamics
americocunhajr/EPIDEMIC
EPIDEMIC is an easy-to-run educational toolkit for epidemiological analysis.
americocunhajr/COVID19RJ
Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.
Mathepia/awesome-sciml
Awesome-spatial-temporal-scientific-machine-learning-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included.
ethrya/circadianGlucose
Physically Based Modelling of Cirdadian Glucose Dynamics
JuliaEpi/MathepiaModels.jl
Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl
norregaarden/bioscillators.com
Exploring biological networks with javascript
americocunhajr/epidWaves
epidWaves is a package to fit multi-wave statistical models to the complex epidemic data.
JuliaEpi/Mathepia.jl
Spatial and temporal epidemiology data mining flow tools including data processing and analysis, model setup and simulation, inference and evaluation. Focusing on state-of-the-art methods such as universal differential equations, epidemiology-informed deep learning methods.
Layton-Lab/nephron
Computational models for epithelial transport along the nephron.
leihuang/rxnnet
A Python package for representing reaction networks and simulating their behaviors
Song921012/MathEpiDeepLearningTutorial
Tutorials on math epidemiology and epidemiology informed deep learning methods
julien-arino/3MC-mathematical-modelling-in-biology
3MC - African Mathematical School on Mathematical Modeling in Biology
CZenkert/Turing-Pattern-Formation
lattice based model of stripe formation in zebra fish
ecomino/Actomyosin-Structures-in-Stress-Fibres
Code base for honours thesis
GaTechBrownLab/qsmodels
Mathematical Models of Quorum Sensing
jtbates/MMiB_R
R code for Allman And Rhodes' book "Mathematical Models in Biology: An Introduction"
KCGallagher/Schnakenberg_Sim
Basic Turing Pattern Model using the Schnakenberg System
PabRod/Chaos-and-neutrality
Analysis script for "Neutral competition boosts chaos in food webs"
abdouf/parasite-induced-shifts
The files in this repository reproduce all the simulations and graphs in the paper, Fofana & Hurford 2022, Parasite-induced shifts in host movement may explain the transient coexistence of high- and low-pathogenic disease strains, J Evol Biol.
catohaste/neighbourhood-streak
Implementation of two models which study how positional information is encoded and interpreted in the developing embryo.
hakimbazol/iGEMITB2017
The codes of Drylab Team, iGEM ITB 2017 to support the wetlab.
Layton-Lab/nephron-calcium
Epithelial water and solute transport along the nephron with a focus on calcium transport and regulation.
Mathepia/MathepiaPrograms
Resources about projects on mathematical biology.
pknight24/random-fish-migration
COMAP 2020 Submission
shraddhapuntambekar/Mathematical-model-for-sumoylation
Mathematical model for sumoylation
wsamyono/JarvisBulldogTeamFacHackGW23
This repository is for Jarvis Bulldog Team of FacutyHack@Gateways23 with SGX3.
DelSquared/Predator-Only-Lotka-Volterra-Model
Predator Only Lotka–Volterra Model
gualapuromoises/MoisesGualapuro
Moises curriculum, teaching experience and research interests.
julien-arino/julien-arino.github.io
Personal page of Julien Arino
KarlJack47/HybridCAFieldCancerization
Hybrid Cellular Automata that represents field cancerization.