metatranscriptomics
There are 38 repositories under metatranscriptomics topic.
merenlab/anvio
An analysis and visualization platform for 'omics data
sortmerna/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
soedinglab/plass
sensitive and precise assembly of short sequencing reads
jolespin/veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
iquasere/KEGGCharter
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
iquasere/MOSCA
Meta-Omics Software for Community Analysis
nf-core/metatdenovo
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
ablab/metaGT
Pipeline for metagenome and metatranscriptome joint assembly
FEI38750/MTD
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
ASaiM/framework
Open-source opinionated Galaxy-based framework for microbiota analysis
muzafferarikan/gNOMO2
gNOMO2 allows integrated multi-omics analyses of microbiomes
anwarMZ/CoMW
Comparative Metatranscriptomics Workflow
SilentGene/MultiOmicAnalysis
Genome-centric Multi-omic Analysis Workflow for the Marinimicrobia paper
KevinMcDonnell6/chordomics
Interactive visualisation and data annotation for meta-omics data
PNNL-CompBio/perseq
:cake: Per sequence functional classification and taxonomic assignments
NBISweden/contigtax
Taxonomic classification of metagenomic contigs
poursalavati/SOVAP
The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.
OpenOmics/metamorph
Metagenomics and Metatranscriptomics pipeline
SchlossLab/Jenior_Metatranscriptomics_mSphere_2018
Repository associated with Jenior ML, et al. (2018). mSphere.
BirgitRijvers/EMC-MetaMicrobes
Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.
microbiomedata/metaT
Metatranscriptomics workflow
AU-ENVS-Bioinformatics/TotalRNA-Snakemake
A pipeline for TotalRNA analysis
raw-lab/metaome_stats
Statistical package for metaome denovo assembly results.
rjstevick/NBayTNCoystersAnalysis
Scripts for analysis of metatranscriptomic and 16S rRNA amplicon data from wild oysters in Narragansett Bay
duartebred/Mapping-Omics-datasets-on-KEGG-Metabolic-Pathways
Repository for the presentation of work developed by the student Duarte Velho for the UC Project, of the Master in Bioinformatics of the University of Minho, academic year 23-24.
erikrikarddaniel/magmap
Nextflow (nf-core) workflow for mapping reads to large collections of genomes.
gabrielvpina/ViewVir
ViewVir - A pipeline for viral diversity analysis
genomeud/SRA-ome
Code for systematically classify data in SRA according to all the taxa present in the reads (SRA-metagenome)
hermidalc/dragonfish
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
hiraokas/ProbeCaptureEnrichmentSequencing_amoA
Probe capture enrichment sequencing of amoA genes
jmpolinski/Moytirra-Hydrothermal-Vent-Plume
A primary goal of this research was to characterize vent plume biogeography across a spatial gradient. This study was done in collaboration with OceanX during the 2021 Young Explorers Program.
metavannier/metatranscriptomics-bulkrnaseq_workflow
This workflow performs a metatranscriptomics and bulk RNAseq analysis from the sequencing output data to the differential expression analyses.
MiriamMarinS/NibenMetaTranscriptomics
Meta Transcriptomic study of Nicotiana benthamiana to look for high expressed locations in the genome.
WEHI-ResearchComputing/samsa2-nf
Nextflow translation for SAMSA2 metatranscriptomics pipeline. Tailored for running on WEHI Milton.