totajuliusd/topr
topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire genome (Manhattan plot) or in the more detailed regional view.
HTMLNOASSERTION
Issues
- 2
Mark target SNP in locuszoomplot
#86 opened by paulandroide - 4
Non-human genomes.
#22 opened by Eugenia-L - 3
Missing R2 values
#61 opened by frahimov - 4
Change color of datasets in Manhattan/region plot
#63 opened by zara03 - 2
locuszoom issues
#64 opened by mvab - 1
get_lead_snps region_size parameter
#65 opened by kscott-1 - 1
Colocalization plot
#62 opened by sahirbhatnagar - 7
saving plots
#15 opened by zhannabalkhiyarova - 17
Region plot 'a' in the legend plot
#58 opened by karpat90 - 0
Additional NA's in figure legend when displaying multiple datasets with topr v. 2.0.0 is and ggplot v. 3.5.0
#60 opened by totajuliusd - 14
- 2
Multiple line thresholds on one manhattan plot
#53 opened by hlnicholls - 8
- 4
Labels for Y chromosome, NA
#31 opened by Hugo-Biolizard - 3
Chromosome numbers being dropped from X-axis
#33 opened by rstubbins - 2
Colour configuration in qqtopr
#35 opened by ejade42 - 4
Plotting very small p-values
#16 opened by eavalo - 2
Multiple plots in a for loop
#34 opened by hlnicholls - 1
Inconsistent number of exons being plotted
#32 opened by sahirbhatnagar - 4
Error in paste(CHROM, POS, REF, ALT, sep = ":", collapse = ", ") : object 'REF' not found
#30 opened by qj009 - 2
Annotation source
#29 opened by shudanhua - 1
annotate_with_nearest_gene()
#28 opened by DM087 - 6
- 2
GRCh38 v GRCh37 in UKB
#17 opened by asoroosh - 2
Color GWAS peaks
#21 opened by bridgetrileygillis - 2
- 5
Genome build?
#1 opened by PDRohde