totajuliusd/topr

Issues

• avoid overplotting with manhattan()

  #91 opened 2 months ago by RvV1979
  0

• More control over colors to improve consistency across different plots

  #89 opened 4 months ago by RvV1979
  1

• empty plot when plotting with 'regionplot'

  #88 opened 4 months ago by zhana-optima
  18

• 'annotate' function

  #87 opened 5 months ago by MC4R
  4

• Additional NA's in figure legend when displaying multiple datasets with topr v. 2.0.0 is and ggplot v. 3.5.0

  #60 opened 5 months ago by totajuliusd
  0

• Mark target SNP in locuszoomplot

  #86 opened 7 months ago by paulandroide
  2

• Non-human genomes.

  #22 opened a year ago by Eugenia-L
  4

• Missing R2 values

  #61 opened 7 months ago by frahimov
  3

• Change color of datasets in Manhattan/region plot

  #63 opened 7 months ago by zara03
  4

• locuszoom issues

  #64 opened 7 months ago by mvab
  2

• get_lead_snps region_size parameter

  #65 opened 7 months ago by kscott-1
  1

• Colocalization plot

  #62 opened 9 months ago by sahirbhatnagar
  1

• saving plots

  #15 opened a year ago by zhannabalkhiyarova
  7

• Region plot 'a' in the legend plot

  #58 opened 10 months ago by karpat90
  17

• Can users specify REF/ALT allele column names for topr?

  #48 opened a year ago by jielab
  14

• Multiple line thresholds on one manhattan plot

  #53 opened a year ago by hlnicholls
  2

• Manhattan subplots with known and novel color coding for both plots

  #50 opened a year ago by hlnicholls
  8

• Labels for Y chromosome, NA

  #31 opened a year ago by Hugo-Biolizard
  4

• Chromosome numbers being dropped from X-axis

  #33 opened a year ago by rstubbins
  3

• Colour configuration in qqtopr

  #35 opened a year ago by ejade42
  2

• Plotting very small p-values

  #16 opened a year ago by eavalo
  4

• Multiple plots in a for loop

  #34 opened a year ago by hlnicholls
  2

• Inconsistent number of exons being plotted

  #32 opened a year ago by sahirbhatnagar
  1

• Error in paste(CHROM, POS, REF, ALT, sep = ":", collapse = ", ") : object 'REF' not found

  #30 opened a year ago by qj009
  4

• Annotation source

  #29 opened a year ago by shudanhua
  2

• annotate_with_nearest_gene()

  #28 opened a year ago by DM087
  1

• SNPs points can not fill the whole plot (I am plotting rice not human data)

  #26 opened a year ago by qj009
  6

• GRCh38 v GRCh37 in UKB

  #17 opened a year ago by asoroosh
  2

• Color GWAS peaks

  #21 opened a year ago by bridgetrileygillis
  2

• Coloured box missing on chr 22 when no chrX in data set

  #14 opened a year ago by amymariemason
  2

• Genome build?

  #1 opened 2 years ago by PDRohde
  5