trokhym1

trokhym1's Stars

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k1021.3k576

• nanoporetech/medaka

  Sequence correction provided by ONT Research

  Language:Python4014648973

• nanoporetech/pod5-file-format

  Pod5: a high performance file format for nanopore reads.

  Language:C++1242713915

• esteinig/nanoq

  Minimal but speedy quality control for nanopore reads in Rust :bear:

  Language:Rust11144210

• rpetit3/dragonflye

  :dragon: :fly: Assemble bacterial isolate genomes from Nanopore reads

  Language:Perl11143410

• nanoporetech/read_until_api

  Read Until client library for Nanopore Sequencing

  Language:Python10243013

• nodrogluap/OpenDBA

  GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging

  Language:C++6181913

• PacktPublishing/Bash-Cookbook

  Bash Cookbook, published by Packt

  Language:Shell5710137

• mattloose/RUscripts

  Scripts for implementing read until and other examples.

  Language:Python311038

• jgans/thermonucleotideBLAST

  Searching DNA/RNA sequence databases with PCR and/or probe queries

  Language:C++161910

• michaelbarton/organised_experiments

  Example of how bioinformatics experiments can be organised using object relational mapping, rake files, and data validations

  Language:Ruby153

• Clinical-Genomics/downsampling

  Downsample fastq files in an automated way

  Language:Shell121044

• LooseLab/read_until_api_v2

  Python3 Read Until API implementation

  Language:Python11701

• Joe-Heffer-Shef/pyminknow

  Mock minKNOW gRPC server

  Language:Python8202

• mattloose/RUFigs

  Language:Jupyter Notebook6401

• jimmyliu1326/isPCR

  Rapid local alignment search by in silico PCR

  Language:Groovy4300

• coadunate/MICAS

  MinION Classification & Alerting System

  Language:TypeScript35531

• coadunate/nanopore-data-visualizer

  This repository contains the program that visualizes the signal data coming off of a MinION DNA Seq

  Language:Python3500

• jimmyliu1326/seqdb

  Local Sequence Database Management Functions

  Language:Shell2102

• jimmyliu1326/thermonucleotideBLAST

  Searching DNA/RNA sequence databases with PCR and/or probe queries

  Language:C++2101

• ArnieBerg/FlowScripts

  Store production and test FlowScripts

  1100

• jimmyliu1326/CBW23_IDGE_Module5

  120

• jimmyliu1326/SamnSorter

  Fast assortment of Salmonella genomes into stable clusters using phylogenetic placement and kNN classifier

  Language:R110