tseemann/any2fasta

Issues

• "ERROR: Unfamilar format with first line" with gzipped file

  #27 opened 2 years ago by safrye
  0

• Only converts first read of nanopore fastq.gz file

  #26 opened 2 years ago by erinyoung
  5

• option -w to set length line not working

  #23 opened 3 years ago by lmanchon
  1

• converting multiple files from directory

  #21 opened 2 years ago by Krysasp
  2

• feature request any2fasta file.pdb

  #20 opened 4 years ago by avilella
  1

• GBK should use VERSION not ACCESSION for sequence ID

  #24 opened 3 years ago by andersgs
  1

• purify_dna called twice

  #25 opened 2 years ago by tseemann
  0

• N sequence for GBK missing // terminator

  #19 opened 4 years ago by tseemann
  0

• Robuster GBK parsing

  #17 opened 5 years ago by tseemann
  0

• Add BED output option

  #16 opened 5 years ago by tseemann
  0

• Add option to deal with pipe chars in IDs

  #15 opened 6 years ago by tseemann
  0

• NCBI gbff file to fasta

  #14 opened 6 years ago by tiramisutes
  2

• Stripping version information?

  #13 opened 6 years ago by andersgs
  0

• Add Stockholm format

  #11 opened 6 years ago by tseemann
  0

• Add CLUSTAL format

  #10 opened 6 years ago by tseemann
  0

• Only load first row to check, then load rest

  #9 opened 6 years ago by tseemann
  0

• Add EMBL file support

  #8 opened 6 years ago by tseemann
  0

• Skip blank lines in parse_fasta

  #6 opened 6 years ago by tseemann
  0

• Support (multi-line) FASTQ files

  #7 opened 6 years ago by tseemann
  1

• Handle multiple files of different types

  #5 opened 6 years ago by tseemann
  1

• Support .gz compression

  #2 opened 6 years ago by tseemann
  1

• Support .gfa format

  #3 opened 6 years ago by tseemann
  0

• Add option -w for chars per line

  #4 opened 6 years ago by tseemann
  0

• Fails badly when input is /dev/null

  #1 opened 6 years ago by tseemann
  0