turbomam/examples-first-cookiecutter

Issues

• duplicated makefile target `target/usage_template.tsv`

  #131 opened a year ago by turbomam
  0

• duplicated target/usage_template.tsv in makefile

  #130 opened a year ago by turbomam
  0

• designates types slots don't have a type asserted in RDF/TTL generation

  #129 opened a year ago by turbomam
  0

• multiple value/list formats used by schemasheets and TSV generation are different

  #128 opened a year ago by turbomam
  0

• linkml to DH JSON conversion could generate pretty, indented output

  #127 opened a year ago by turbomam
  1

• how to ensure that slots used for slot_group have been defined

  #126 opened a year ago by turbomam
  0

• how to get DH columns into desired sections and ordering

  #125 opened a year ago by turbomam
  0

• discourage slot_usage on slots with implementation

  #124 opened a year ago by turbomam
  0

• check referential integrity

  #123 opened a year ago by turbomam
  0

• have we made it clear enough that examples data for this repo should come in a collection?

  #122 opened a year ago by turbomam
  0

• have I accidentally reverted to making open json schemas?

  #121 opened a year ago by turbomam
  0

• Merge in best bits from other repos I've been experimenting in

  #117 opened a year ago by turbomam
  4

• `make setup` leaves `data_harmonizer/` uncommitted

  #108 opened a year ago by turbomam
  0

• steps for initializing local dh

  #109 opened a year ago by turbomam
  3

• Autodetect LinkML file formats fro DH JSON conversion

  #91 opened a year ago by turbomam
  0

• document how to create local DataHarmonizer

  #37 opened a year ago by turbomam
  2

• add the two DH/LinkML data conversion scripts as they are

  #70 opened a year ago by turbomam
  0

• dates collected by DH are actually datetimes

  #74 opened a year ago by turbomam
  8

• schema issues discovered in DataHarmonizer testing

  #47 opened a year ago by turbomam
  1

• Add pre-built DataHarmonizer directory. Integrate publication with GH action for deploying schema docs pages.

  #94 opened a year ago by turbomam
  0

• add DataHarmonizer/LinkML JSON converter

  #40 opened a year ago by turbomam
  0

• Make sure that all slots have scalar ranges for DataHarmonizer

  #46 opened a year ago by turbomam
  0

• document how to embed DataHarmonizer in generated (documentation) GH pages site

  #38 opened a year ago by turbomam
  0

• sometimes `make all` or `make site` say "Nothing to be done"

  #101 opened a year ago by turbomam
  0

• Provide documentation about converting an exiting repo to cookiecutter compliance

  #100 opened a year ago by turbomam
  0

• existing and proposed test steps

  #99 opened a year ago by turbomam
  6

• add "unexpected-x" example directories?

  #98 opened a year ago by turbomam
  0

• src/data/examples/invalid/ThingCollection-no-id.yaml isn't really a collection

  #97 opened a year ago by turbomam
  0

• Some LinkML tools can't handle collections with elements that have only one slot populated

  #96 opened a year ago by turbomam
  0

• Improve the ability of tests/test_valid_collections.py to autodetect the tree root class

  #95 opened a year ago by turbomam
  0

• provide illustrations of DH/LinkML data conversion

  #71 opened a year ago by turbomam
  0

• Support LinkML JSON or YAML in DH/LinkML data converter

  #82 opened a year ago by turbomam
  1

• illustrate the use of a multi-view DatHarmonizer

  #39 opened a year ago by turbomam
  0

• all pull-down options for `vital_status` are listed as 'undefined'

  #59 opened a year ago by turbomam
  3

• URLs like http://localhost:5173?template=my_awesome_schema/Person need an external handler

  #62 opened a year ago by turbomam
  0

• Modify rules in project.Makefile to accept lists of files, esp for valid Collection checking

  #80 opened a year ago by turbomam
  0

• take hard-coding out of validation targets in {{cookiecutter.project_name}}/project.Makefile

  #64 opened a year ago by turbomam
  0

• show output of linkml2sheets

  #75 opened a year ago by turbomam
  6

• add a linkml-validate example

  #58 opened a year ago by turbomam
  0

• use cookiecutter variables to point to a single invalid data file

  #65 opened a year ago by turbomam
  0

• add generation of RDF TTL files by run-linkml-examples

  #36 opened a year ago by turbomam
  2

• are undefined prefixes supposed to pass?

  #51 opened a year ago by turbomam
  1

• add check-jsonschema for short term all-invalids reporting

  #53 opened a year ago by turbomam
  1

• update README etc to reflect new organization of examples

  #45 opened a year ago by turbomam
  0

• one blank id is tolerated

  #48 opened a year ago by turbomam
  0

• `id` of bare '1' is tolerated

  #49 opened a year ago by turbomam
  0

• only copy valid Collection examples into root examples dir

  #42 opened a year ago by turbomam
  0

• check for unexpected singleton validation results

  #34 opened a year ago by turbomam
  1

• check for unexpected singleton validation results

  #35 opened a year ago by turbomam
  0

• Python instantiation test should consider Collections only

  #30 opened a year ago by turbomam
  1