Center for Translational Data Science

Center for Translational Data Science @ University of Chicago

Chicago, IL

Pinned Repositories

arborist
Gen3 policy engine
Language:Go15 22 2216
cloud-automation
Automation for standing up Gen3 commons
Language:Shell41 31 27967
compose-services
Deploy Gen3 using Docker compose
Language:Python14 19 1239
data-portal
Windmill: data portal for metadata submission and query
Language:JavaScript29 31 17444
fence
AuthN/AuthZ OIDC Service
Language:Python38 30 20048
gen3sdk-python
Gen3 SDK for Python
Language:Python14 23 623
indexd
Index service server
Language:Python21 25 7620
metadata-service
The Metadata Service provides API for retrieving JSON metadata of GUIDs.
Language:Python15 15 110
peregrine
GraphQL search API service
Language:Python12 17 359
sheepdog
API for herding data submissions
Language:Python11 23 6517

Center for Translational Data Science's Repositories

uc-cdis/gen3sdk-python
Gen3 SDK for Python
Language:Python14 23 623
uc-cdis/pypfb
Python library & CLI to create, view and edit PFB files
Language:Python9 20 010
uc-cdis/gen3-qa
Integration Tests for Gen3
Language:JavaScript6 23 94
uc-cdis/data-simulator
Language:Python5 21 06
uc-cdis/midrc_dictionary
A data dictionary for the Medical Imaging Resource Data Commons (MIDRC).
Language:Python5 16 05
uc-cdis/dictionaryutils
python wrapper and metaschema for datadictionary
Language:Python4 30 57
uc-cdis/bio-nextflow
Nextflow research and development
Language:HTML2 7 0
uc-cdis/datadictionary
Gen3 Generic Data dictionary
Language:Python2 8 810
uc-cdis/gen3-community
Repo for creating issues and feature requests for the Gen3 Data Platform
2 9 00
uc-cdis/gitops-dev
Language:HTML2 25 05
uc-cdis/aws-batch-jobs
Place to store all aws batch jobs
Language:Python1 16 01
uc-cdis/bih_dictionary
The data dictionary for the MIDRC BDF Imaging Hub.
Language:Python1 8 02
uc-cdis/drsclient
This is the client library for making requests to the GA4GH DRS compatible services and returning an Indexd compatible document.
Language:Python1 18 0
uc-cdis/gen3-igv
IGV Web App
Language:JavaScript1 2 0
uc-cdis/gen3authz
Language:Python1 20 04
uc-cdis/tesk-api
GA4GH TES API Service that translates tasks into Kubernetes Batch API calls
Language:Java0 0 00
uc-cdis/Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
Language:JavaScript2 0
uc-cdis/bdc-data-commons
BDC using Gen 3.2
Language:TypeScript3 0
uc-cdis/BMH-admin-portal
Shared Codebase for the Biomedical Research Hub Initiative
Language:Python11 02
uc-cdis/canine-data-commons
Gen3.2 web portal for caninedc.org
Language:Jupyter Notebook
uc-cdis/datamodelutils
wrapper utils to initialize datamodel from remote dictionary
Language:Python22 02
uc-cdis/dcf-dataservice
Language:Python22 0
uc-cdis/django-DefectDojo
DevSecOps, ASPM, Vulnerability Management. All on one platform.
Language:HTML0 0
uc-cdis/jupyter-superslim
Super slim jupyter base image.
Language:Shell1
uc-cdis/midrc-etl
Language:Jupyter Notebook12 01
uc-cdis/prometheus-data-platform
Gen3 based UI for Prometheus Data Platform
Language:TypeScript
uc-cdis/thor
Gen3 Release Orchestrator
Language:Python10 13
uc-cdis/vadc-mkdocs
VADC documentation
Language:HTML9 01
uc-cdis/vadc-mkdocs-staging
VADC documentation - staging (not live documentation)
Language:HTML0 0
uc-cdis/wool
auto-linting scripts and github utilities
Language:Python1