ultimatesource/denovogear

Issues

• Applying Plugin trio-dnm2 on trio vcf file

  #316 opened 2 years ago by HM-Anas
  0

• No outputs

  #314 opened 2 years ago by Lin-Yuying
  4

• Any suggestion for dnm results filter?

  #315 opened 3 years ago by bucongfan
  0

• Denovogear and DenovogearBB

  #313 opened 3 years ago by StellaXia
  1

• Why 414 and other question about DNG math

  #312 opened 4 years ago by pd3
  2

• bam file for dng-phaser

  #311 opened 5 years ago by mariliascliar
  1

• Having trouble getting non-empty output

  #307 opened 5 years ago by exeter-matthew-wakeling
  1

• Error 2 during compilation

  #306 opened 5 years ago by stanedav
  1

• Having trouble getting non-empty output

  #308 opened 5 years ago by exeter-matthew-wakeling
  1

• buffer overflow detected ***: /usr/local/bin/../libexec/denovogear/dng-dnm terminated

  #288 opened 5 years ago by vgastaldi
  4

• Allele frequency, Allele Depth & Reference Depth

  #305 opened 5 years ago by anushishah
  0

• "make testdata" fails, /denovogear/build/testdata.tar.gz hash doesn't match

  #304 opened 5 years ago by MurphyDavid
  0

• segfault on calls with larger alternates

  #301 opened 5 years ago by jwhitney31337
  1

• GATK vcf as input for dng-dnm

  #297 opened 5 years ago by bthiruv
  7

• snp or indel?

  #300 opened 5 years ago by tatianaliu
  0

• dng phaser for indels

  #298 opened 5 years ago by sjin09
  1

• denovogear no DNM found on CentOS 7 (Core)

  #294 opened 5 years ago by shannjiang
  6

• sample size for each single run of denovogear

  #293 opened 5 years ago by shannjiang
  4

• [E::bcf_hdr_add_sample] Duplicated sample name '.' Aborted (core dumped)

  #302 opened 5 years ago by Saranya-Balachandran
  5

• Trio with Father, Sister, Brother -- getting missing trio messages -- is this normal?

  #299 opened 5 years ago by saliksyed
  0

• Aborted (core dumped) calling trio buffer overflow

  #290 opened 6 years ago by DataOmics76
  4

• vcf input but prompted me bcf parsing error

  #296 opened 6 years ago by shannjiang
  6

• VCF Output v4.3

  #291 opened 6 years ago by reedacartwright
  0

• problems to install

  #289 opened 6 years ago by DataOmics76
  7

• DenovoGear v1.1.1 run didn't call any denovo insertions

  #249 opened 6 years ago by simonzzc034
  20

• why this is not picked up as a de-novo variant

  #287 opened 6 years ago by jielab
  4

• dng call --model=autosomal does not return results

  #286 opened 6 years ago by jielab
  4

• why the same genetic data could go both ways

  #284 opened 6 years ago by jielab
  1

• error when installing with "make -j4"

  #285 opened 6 years ago by zhangjianruwang
  0

• vcf output in the latest development version

  #283 opened 6 years ago by vsvinti
  5

• even the official testing data does not work

  #281 opened 6 years ago by jielab
  2

• Running DNG in parallel

  #271 opened 6 years ago by aschoenr
  34

• How could "de-novo" mutation found from a binary coded 0/1 VCF file

  #280 opened 6 years ago by jielab
  2

• Total number of Paired sample sites interrogated: 0

  #279 opened 6 years ago by jielab
  7

• dng dnm VCF output : off-by-one?

  #265 opened 6 years ago by MikeHala
  5

• Improve pedigree simplification

  #276 opened 6 years ago by reedacartwright
  0

• Bioconda Recipe

  #255 opened 6 years ago by reedacartwright
  18

• Move BAM support from call to pileup.

  #274 opened 6 years ago by reedacartwright
  0

• Support Selfing

  #275 opened 6 years ago by reedacartwright
  0

• Problem during the make step of the installation

  #262 opened 6 years ago by Antoine-Fav
  2

• Total number of SNP sites interrogated: 0

  #266 opened 6 years ago by jielab
  16

• New TAD and AD Formats

  #248 opened 6 years ago by reedacartwright
  1

• Compiling DeNovoGear on CentOS 6.6

  #267 opened 6 years ago by aschoenr
  3

• [dng-dnm][1.1.1 develop] Consumes all available RAM then its get killed by system

  #234 opened 7 years ago by stanedav
  10

• BCF: incorrect number of fields (6 != 5) at 927143687:4074044

  #260 opened 7 years ago by zhangjianruwang
  4

• SegFault in dng dnm

  #250 opened 7 years ago by reedacartwright
  5

• Optimize Region Handling

  #247 opened 7 years ago by reedacartwright
  0

• Missing data in AD fields

  #235 opened 7 years ago by reedacartwright
  0

• Unit test dng::regions fails in Fedora 26

  #237 opened 7 years ago by jgarciamesa
  3

• Support GL and PL fields when processing BCF

  #236 opened 7 years ago by reedacartwright
  1