usegalaxy-eu/ena-upload-cli

Issues

• Submitting paired reads plus their indices

  #96 opened 3 months ago by mobilegenome
  2

• Submitting new project to ENA

  #95 opened 3 months ago by Najatamk
  5

• The license_file parameter is deprecated, use license_files instead.

  #85 opened 9 months ago by FernandoDuarteF
  3

• nan is filled in when column is mandatory and cell is empty

  #62 opened a year ago by bedroesb
  1

• Add support for the submission of analysis objects

  #87 opened a year ago by bedroesb
  0

• Add support for custom attributes

  #86 opened a year ago by bedroesb
  0

• The read operation timed out

  #75 opened a year ago by mthang
  13

• Catching errors better + more clear error messages

  #38 opened 3 years ago by bedroesb
  0

• Name: experiment_alias, dtype: object has no member named "iteritems"

  #83 opened a year ago by FernandoDuarteF
  2

• Include script used to generate tabular metadata templates

  #70 opened 2 years ago by roncoronimiguel
  1

• Correct criteria for a successful submission

  #66 opened 2 years ago by wna-se
  2

• Supporting all optional fields in the run/experiment and study xml

  #37 opened 3 years ago by bedroesb
  1

• Add GitHub Action to check if new xsd templates are added to ENA

  #14 opened 3 years ago by bedroesb
  1

• Empty rows give error

  #52 opened 3 years ago by bedroesb
  0

• Support FTPS connection to protect account credidentials

  #48 opened 3 years ago by wna-se
  7

• [Discussion] Adding support for Nextcloud file transfer to ENA ftp server ?

  #53 opened 3 years ago by bedroesb
  0

• Changing release date through API

  #36 opened 3 years ago by bedroesb
  3

• If table is given without action values, an error is thrown

  #34 opened 3 years ago by bedroesb
  0

• Adding flag to not do a submission but just to generate the XMLs

  #43 opened 3 years ago by bedroesb
  0

• Adding controlled vocabulary to the sample checklists

  #40 opened 3 years ago by bedroesb
  0

• --no_upload parameter not working

  #33 opened 3 years ago by bedroesb
  1

• Most minimal example not working

  #29 opened 3 years ago by bedroesb
  0

• Possible values for file_format are not clear

  #30 opened 3 years ago by rabuono
  2

• Possibility to give the taxon_id through the table

  #6 opened 3 years ago by bedroesb
  1

• Adding support for all official ENA checklists

  #20 opened 3 years ago by bedroesb
  2

• Using the labels from ENA in the tsv table headers instead of the underscore version

  #22 opened 3 years ago by bedroesb
  0

• Library name generation

  #23 opened 3 years ago by roncoronimiguel
  2

• Dropping unnecessary columns

  #21 opened 3 years ago by bedroesb
  0

• Missing / Wrong sequencer identifiers in templates

  #11 opened 3 years ago by mobilegenome
  1

• Possibility to upload non-mandatory (virus) metadata

  #9 opened 3 years ago by tpall
  2

• FTPS instead of FTP

  #5 opened 4 years ago by bedroesb
  0

• Support for ERC000033 checklist

  #7 opened 4 years ago by bedroesb
  1

• Windows compatibility issues

  #3 opened 4 years ago by bedroesb
  0