Pinned Repositories
solarius
R interface to SOLAR
biglmmz
Low-rank linear mixed models (LMMs) powered by bigstatsr
cpca
Common PCA
finemapr
Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
lme4qtl
Mixed models @lme4 + custom covariances + parameter constraints
matlm
linear models (lm) in matrix form: testing multiple predictors faster
paper-neff
Scripts for the Neff paper
pckdev
Package development in R
rexamples
R code for copy & paste
variani's Repositories
variani/lme4qtl
Mixed models @lme4 + custom covariances + parameter constraints
variani/finemapr
Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
variani/cpca
Common PCA
variani/biglmmz
Low-rank linear mixed models (LMMs) powered by bigstatsr
variani/matlm
linear models (lm) in matrix form: testing multiple predictors faster
variani/paper-neff
Scripts for the Neff paper
variani/rexamples
R code for copy & paste
variani/rstats4noobs
Notes about R (rstats)
variani/docker-examples
Docker examples
variani/Workshop_UNAM
Workshop on association mapping at the UNAM, 2023
variani/awesome-mixed-models
A (not yet) curated list of awesome Linear Mixed Model resources
variani/bigcov
Covariance/Correlation for big data in base R
variani/bioinf4noobs
variani/brglm2
Estimation and inference from generalized linear models using explicit and implicit methods for bias reduction
variani/dotfiles
configuration files
variani/ds4noobs
Data Science (DS) notes
variani/ggpointdensity
:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.
variani/lme4noobs
Learn how to use R package lme4
variani/pixelart
R package and Shiny app to make pixel art models and to resize images
variani/Post-QC
Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a reference panel.
variani/python4noobs
Learn python
variani/qq
Q-Q plots, inflation and friends
variani/RcppChoose
Rcpp/R package that combines c++/R code
variani/RcppLinker
R package to showcase linking to external Rcpp functions
variani/RcppStatGen
Rcpp code for Statistical Genetics
variani/regenie
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
variani/rgwas
Learn and validate subtypes from multiple traits
variani/talks
My public talks
variani/vimium
The hacker's browser.
variani/wlm
linear model (lm) weighted in many ways: wls, gls, lmm1