vbonnici

LErNet

LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis

PanDelos

A dictionary-based method for pan-genomic contents discovery.

PANPROVA

PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies

RI

RI is a general purpose algorithm for one-to-one exact subgraph isomorphism problem maintaining topological constraints.

ArcMatch

ArcMatch

ArcMatch-datasets

Protein-Protein interaciot network data set wtih labels on vertices and edges

Discrete-Biological-Models

DoLiER

An enhanced suffix array (SA + LCP) for indexing collections of documents in order to search and enumerate k-mers in DNA sequences

InformationalGenomics

Ph.D. course "Informational genomics: information content of genomes and its divergence from randomness"

KL-maxima

Maximum value for Kullback-Leilbler divergence between discrete probability distributions

vbonnici/KL-maxima

Maximum value for Kullback-Leilbler divergence between discrete probability distributions

vbonnici/ArcMatch

ArcMatch

vbonnici/ArcMatch-datasets

Protein-Protein interaciot network data set wtih labels on vertices and edges

vbonnici/Discrete-Biological-Models

vbonnici/DoLiER

An enhanced suffix array (SA + LCP) for indexing collections of documents in order to search and enumerate k-mers in DNA sequences

vbonnici/grafe-sim

Code similarity via graph-based features

vbonnici/InformationalGenomics

Ph.D. course "Informational genomics: information content of genomes and its divergence from randomness"

vbonnici/rdd-biomarkers-v0

Investigation regarding recurrence distance distribution as genomic biomarkers for phlyogenomic analyses

vbonnici/genapit_test

vbonnici/GRAPES

GRAPES

vbonnici/PanDelos

A dictionary-based method for pan-genomic contents discovery.

vbonnici/PanDelos-plusplus

PanDelos in C++

vbonnici/prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

vbonnici/TFBS-scorings