Pinned Repositories
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
gatk
Official code repository for GATK versions 4 and up
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
gatk4-somatic-snvs-indels
This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
wdl
Workflow Description Language - Specification and Implementations
ashg20
Resources for Terra tutorial for ASHG 2020 workshop
demos
Workflows used for teaching and demonstration purposes
GATK-for-Microbes
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
vdauwera's Repositories
vdauwera/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
vdauwera/ashg20
Resources for Terra tutorial for ASHG 2020 workshop
vdauwera/demos
Workflows used for teaching and demonstration purposes
vdauwera/GATK-for-Microbes
vdauwera/genomics-in-the-cloud
Source code and related materials for the O'Reilly book
vdauwera/home
vdauwera/newsletter
repo for OBF community newsletter updates
vdauwera/nf-training-intro
vdauwera/parsedown
Better Markdown Parser in PHP
vdauwera/parsedown-extra
Better Markdown Extra Parser in PHP
vdauwera/pipelines-api-examples
Examples for the Google Genomics Pipelines API.
vdauwera/product-process
vdauwera/tool-registry-schemas
APIs for discovering genomics tools, their metadata and their containers
vdauwera/training
Nextflow training material
vdauwera/vdauwera.github.io
Build a Jekyll blog in minutes, without touching the command line.
vdauwera/vrs-python
GA4GH Variation Representation Python Implementation
vdauwera/warp
WDL Analysis Research Pipelines — GVdA
vdauwera/wdl
Workflow Description Language - Specification and Implementations
vdauwera/wdltool