velocyto-team/velocyto.R

Issues

• ERROR - Can not locate the barcodes.tsv file!

  #183 opened 3 years ago by chrismahony
  4

• Compilation failure

  #211 opened 6 months ago by davidjquispe
  3

• Problem Installing Mac M3 Sonoma

  #207 opened a year ago by joshuagmedina
  4

• top spliced genes

  #210 opened 6 months ago by Flu09
  0

• Problem installing VelocytoR in macOS

  #167 opened 4 years ago by ahmadsam66
  12

• cannot find -lboost_filesystem

  #208 opened a year ago by robin-sto
  2

• libhdf5_hl.so.8

  #209 opened a year ago by robin-sto
  0

• Error reading loom file converted from Seurat object for Velocity

  #206 opened a year ago by peictang
  0

• read.loom.matrices failed when reading loom file

  #165 opened 4 years ago by zerogeass
  4

• Velocyto quits without error

  #159 opened 4 years ago by weishwu
  5

• Could we apply this method to Visium data (No polyA-tailed method)?

  #205 opened a year ago by oghzzang
  0

• Integration of 10x PolyA Data with Fixed RNA Profiling

  #204 opened a year ago by ckfromCN
  0

• can I use ensembl IDs instead of gene names

  #203 opened a year ago by breelege
  0

• Could not retrieve index file

  #201 opened a year ago by sanderslhc
  0

• problem installing

  #196 opened 2 years ago by ElenaSLuis
  3

• Can we set colors for cell borders in show.velocity.on.embedding.cor?

  #200 opened a year ago by stanaka6
  0

• Running velocyto on adata object

  #199 opened 2 years ago by AnuSitu1
  0

• Links to tutorials broken

  #197 opened 2 years ago by rachelzoeb
  0

• filter.genes.by.cluster.expression error

  #195 opened 2 years ago by Junedays
  0

• Installation Problems (Lack of 'lboost-filesystem')

  #191 opened 2 years ago by BennyHz
  3

• visualize the plot show.velocity.on.embedding.cor

  #193 opened 2 years ago by yamihn
  0

• ERROR: compilation failed for package 'velocyto.R'

  #192 opened 2 years ago by geng-lee
  0

• time required to get the output of plot

  #190 opened 2 years ago by feanaros
  0

• velocyto installation error

  #189 opened 2 years ago by TamaraSall
  0

• RunVelocity() requested size is too large; suggest to enable ARMA_64BIT_WORD

  #188 opened 2 years ago by Totoro-chen
  0

• velocyto.R installation error "velocyto.R_0.6.tar.gz had non-zero exit status"

  #187 opened 3 years ago by galaxyeee
  0

• Do I need to normalize unspliced reads as long as I've normalized spliced reads?

  #186 opened 3 years ago by dg520
  0

• plot warning

  #185 opened 3 years ago by vicscott
  1

• Separating intron exon bam

  #184 opened 3 years ago by DDoddamani
  0

• Illegal instruction (core dumped)

  #180 opened 3 years ago by chrismahony
  0

• Error while running show.velocity (rep(x, sum(vg)))

  #182 opened 3 years ago by DRLMQ
  0

• Normalization of the spliced and unspliced assays

  #181 opened 3 years ago by rythi4
  0

• What folders are needed when running 10X?

  #179 opened 3 years ago by HocheolJang426
  1

• Installation Ubuntu 20.04 R4.1

  #174 opened 3 years ago by colindaven
  1

• Question for combing loom files

  #178 opened 3 years ago by Huimin721
  0

• Bus error (core dumped)

  #177 opened 3 years ago by danli349
  0

• How to save loom file and output .loom file

  #176 opened 3 years ago by Roeply
  0

• filtering

  #175 opened 3 years ago by elengss
  0

• Running Error

  #173 opened 3 years ago by danjong99
  0

• Error with main velocity estimation

  #172 opened 3 years ago by Battamama
  0

• Error: cannot allocate vector of size 88.4 Gb Execution halted

  #171 opened 4 years ago by yanglq-bio
  0

• dyld: Library not loaded: @rpath/libcrypto.1.0.0.dylib dyld

  #170 opened 4 years ago by cguetta
  0

• Is the negative slope taken by velocyto.R when a cell is below the steady state line?

  #169 opened 4 years ago by eregenyi
  0

• installation of package ‘/tmp/RtmpIwaJfu/file44453795c874/velocyto.R_0.6.tar.gz’ had non-zero exit status

  #168 opened 4 years ago by avilella
  1

• Analysis speed up?

  #166 opened 4 years ago by woodyNsinbad
  0

• Can't install velocyto.R on remote R server

  #163 opened 4 years ago by annaliem
  0

• How to generate pseudotime of cells

  #164 opened 4 years ago by mabaoweireadingene
  0

• How to generate pseudotime of cells

  #162 opened 4 years ago by mabaoweireadingene
  0

• Hematopoiesis velocity

  #161 opened 4 years ago by XYZuo
  0

• No arrow was shown in show.velocity.on.embedding.cor()

  #160 opened 4 years ago by grimwoo
  0