Pinned Repositories
KinomeScripts
Scripts for Andrew Lutsky
ProDy
A Python Package for Protein Dynamics Analysis
AnnoGenie
A bioinformatics pipeline for the de-novo annotation of genomes using NGS data from closely related species.
AsthmaClustering
Final project for 02-680 (Machine Learning for Scientists) at CMU. Implementation of algorithms to cluster genes based on asthma severity and implementation of an asthma severity classifier.
graphpocket
Predicting protein binding pocket similarity using graph neural networks.
mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
ProDy
A Python Package for Protein Dynamics Analysis
ProDy-website
ProDy Website
PromoterStrength
Model to predict promoter strength using embeddings generated from a DNA large language model.
vlr-hw1
Classification and Detection
vratins's Repositories
vratins/graphpocket
Predicting protein binding pocket similarity using graph neural networks.
vratins/AnnoGenie
A bioinformatics pipeline for the de-novo annotation of genomes using NGS data from closely related species.
vratins/AsthmaClustering
Final project for 02-680 (Machine Learning for Scientists) at CMU. Implementation of algorithms to cluster genes based on asthma severity and implementation of an asthma severity classifier.
vratins/mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
vratins/ProDy
A Python Package for Protein Dynamics Analysis
vratins/ProDy-website
ProDy Website
vratins/PromoterStrength
Model to predict promoter strength using embeddings generated from a DNA large language model.
vratins/vlr-hw1
Classification and Detection