vratins

Computational Structural Biology

Pinned Repositories

KinomeScripts
Scripts for Andrew Lutsky
Language:Jupyter Notebook30
ProDy
A Python Package for Protein Dynamics Analysis
Language:Python439 25 700158
gemmi
macromolecular crystallography library and utilities
Language:C++237 17 19046
AnnoGenie
A bioinformatics pipeline for the de-novo annotation of genomes using NGS data from closely related species.
Language:Shell01
AsthmaClustering
Final project for 02-680 (Machine Learning for Scientists) at CMU. Implementation of algorithms to cluster genes based on asthma severity and implementation of an asthma severity classifier.
Language:Jupyter Notebook01
mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Language:Python00
ProDy
A Python Package for Protein Dynamics Analysis
Language:Python00
ProDy-website
ProDy Website
Language:Jupyter Notebook00
PromoterStrength
Model to predict promoter strength using embeddings generated from a DNA large language model.
Language:Jupyter Notebook00
vlr-hw1
Classification and Detection
Language:Python00

vratins/AnnoGenie
A bioinformatics pipeline for the de-novo annotation of genomes using NGS data from closely related species.
Language:Shell01
vratins/AsthmaClustering
Final project for 02-680 (Machine Learning for Scientists) at CMU. Implementation of algorithms to cluster genes based on asthma severity and implementation of an asthma severity classifier.
Language:Jupyter Notebook01
vratins/mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Language:Python00
vratins/ProDy
A Python Package for Protein Dynamics Analysis
Language:Python00
vratins/ProDy-website
ProDy Website
Language:Jupyter Notebook00
vratins/PromoterStrength
Model to predict promoter strength using embeddings generated from a DNA large language model.
Language:Jupyter Notebook00
vratins/vlr-hw1
Classification and Detection
Language:Python00