waldronlab/curatedMetagenomicDataAnalyses

Issues

• ANCOMBC arguments/output issues in NUI Galway Metagenomics Workshop

  #51 opened 4 days ago by cmirzayi
  0

• Error Assay.type

  #48 opened 2 years ago by MinLuke
  6

• Retrieve biom table and metadata tsv for entire dataset

  #49 opened 7 months ago by tydymy
  1

• Metaphlan database version

  #50 opened 4 months ago by peter-kanvas
  0

• Error in access data

  #47 opened 2 years ago by MinLuke
  1

• retrieve raw data

  #46 opened 2 years ago by bfebles
  2

• whether the study factor needs to be considered?

  #45 opened 2 years ago by zhangy2361
  0

• translate cMD1 paper analyses to cMD3

  #1 opened 4 years ago by lwaldron
  2

• conda install available ?

  #42 opened 2 years ago by ADGM
  1

• Fix docker issues

  #35 opened 2 years ago by jwokaty
  2

• possible to change repo name

  #31 opened 3 years ago by schifferl
  5

• Age and Sex metaanalysis vignettes broken in cMD 3

  #41 opened 3 years ago by lwaldron
  1

• BiocManager::install("waldronlab/curatedMetagenomicAnalyses") failed

  #39 opened 3 years ago by zckoo007
  5

• README.md links don't work from pkgdown

  #36 opened 3 years ago by lwaldron
  3

• gh-pages missing vignette

  #33 opened 3 years ago by schifferl
  1

• skbio not installing

  #28 opened 3 years ago by jwokaty
  0

• login screen does not display properly

  #27 opened 3 years ago by schifferl
  2

• Create a table of contents for the analyses in the README

  #23 opened 3 years ago by jwokaty
  0

• Create a pkgdown site for the analyses

  #24 opened 3 years ago by jwokaty
  1

• Add link to paper and fix figure

  #20 opened 3 years ago by jwokaty
  1

• Changes to Python analysis notebook

  #14 opened 3 years ago by jwokaty
  0

• README in docker

  #15 opened 4 years ago by jwokaty
  1

• Make a pip requirements file to version Python packages

  #13 opened 4 years ago by jwokaty
  0

• get GHA building

  #3 opened 4 years ago by lwaldron
  3

• Make a Dockerhub image

  #4 opened 4 years ago by lwaldron
  1

• Duplicate row names in dataDump

  #7 opened 4 years ago by jwokaty
  1