Pinned Repositories
anchr
The Assembler of N-free CHRomosomes
App-Egaz
dotfiles
My configuration files on macOS
faops
faops operates fasta files
intspan
Command line tools for IntSpan related bioinformatics operations
lecture-slides
Slides for my course "General Biology".
nwr
`nwr` is a command line tool for working with NCBI taxonomy, Newick files and assembly reports
phylo-tree
Create phylogenetics trees by xelatex/tikz/forest
windows
Setting-up scripts for Windows
withncbi
egaz and alignDB work with external (NCBI/EBI) data
wang-q's Repositories
wang-q/egaz
(DEPRECATED) The backend of Easy Genome Aligner
wang-q/multiz
A strip-down version of multiz-tba
wang-q/egas
DEPRECATED: Whole genome self alignments procedure for finding segment duplications (and partial WGD).
wang-q/alignDB
Analyze the relationship between indels and substitutions in genomes
wang-q/AlignDB-Codon
translate sequences and calculate Dn/Ds
wang-q/AlignDB-IntSpan
Handling of sets containing integer spans.
wang-q/fig_table
Create figs and tables from excel files. Mainly works on Windows.
wang-q/AlignDB-DeltaG
Calculate deltaG of polymer DNA sequences
wang-q/AlignDB-Excel
DEPRECATED: Use excel to draw charts.
wang-q/AlignDB-GC
GC-related analysises
wang-q/AlignDB-Run
Run in parallel mode without pains.
wang-q/AlignDB-SQL
An SQL statement generator.
wang-q/AlignDB-Stopwatch
Record running time and print standard messages
wang-q/AlignDB-ToXLSX
Generate xlsx files from SQL queries or just arrays.
wang-q/AlignDB-Util
DEPRECATED: Misc functions for AlignDB
wang-q/AlignDB-Window
Split integer spans into a series of windows
wang-q/AliView
Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
wang-q/App-GAWM
GAWM: Genome Analyst with MongoDB
wang-q/App-Rangeops
wang-q/DEXTRACTOR
Bax File Decoder and Data Compressor
wang-q/download
Download a whole static site or ftp directories in http mode.
wang-q/gawm
(DEPRECATED) GAWM - Genome Analyst with Mongodb
wang-q/jvarkit
Java utilities for Bioinformatics
wang-q/miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
wang-q/mtheme
A modern LaTeX Beamer theme
wang-q/psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
wang-q/simulation
Some population genetic simulations
wang-q/sparseMEM
http://compbio.cs.princeton.edu/mems/
wang-q/Task-EGA
Task::EGA - EGA bundle
wang-q/tool
DEPRECATED: tools of my own.