Pinned Repositories
bat_ht
Workflow for computational identification of putative horizontally transferred DNA transposons involving 37 bat species.
Buffalo_PopGenomics
Scripts for processing and analysing resequencing data, as well as R scripts for producing figures from some of the results for the manuscript: de Jager, D. et al. High diversity, inbreeding and a dynamic Pleistocene demographic history revealed by African buffalo genomes. Sci. Rep. 11, 4540, doi:10.1038/s41598-021-83823-8 (2021).
carpsGenome
HiC_tools
A collection of tools for Hi-C data analysis
lettuce2020
Codes for the lettuce resequencing project in 2020
mouse_mm10_conserved_elements
code to identify conserved elements for mm10 mouse genome
PanSyn
RNA-Seq-Pipeline
RNA-Seq Pipeline written in Python
RNAseq_workflow
This is a RNAseq workflow.
Sus_cebifrons_genome
Code for the assembly, annotation and comparative analyses of sus cebifrons genome
wangchengww's Repositories
wangchengww/carpsGenome
wangchengww/PanSyn
wangchengww/SyntenyFinder
wangchengww/AnnotateSnakeMake
wangchengww/Chromosome_evolution_Lepidoptera_MS
Scripts associated with 'Chromosome Evolution in Lepidoptera' manuscript
wangchengww/CN1
The complete sequence of a Chinese individual
wangchengww/cnidariangenomes
Code for the Nematostella Vectensis and Scolanthus Calimorphus genome assembly and analysis
wangchengww/Convergent-evolution-of-viviparity-in-Cyprinodontiformes
wangchengww/duck_comp_gen
Comparative genomics of obligate brood parasite and closely related species in Anatidae
wangchengww/gBGC-drives-accelerated-evolution-of-UCEs
Scripts and piplines for the UCE identification and other analyses.
wangchengww/Genome-macrosynteny-gene-family-evolution
wangchengww/Genome-Wide-Annotation-Pipeline
This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
wangchengww/GitHubDaily
坚持分享 GitHub 上高质量、有趣实用的开源技术教程、开发者工具、编程网站、技术资讯。A list cool, interesting projects of GitHub.
wangchengww/HGTs
Identification of HGTs in eukaryotic genomes
wangchengww/IntronOrNot
Ensembl GSoC 2023 Project Mirror - Differentiating Real and Misaligned Introns with Machine Learning
wangchengww/Littorina_reproductive_mode
wangchengww/OR_identify
wangchengww/Parnassius-glacialis-genome-analysis
wangchengww/Plant-genome-evolution-in-the-genus-Eucalyptus
Scripts for all Eucalyptus paper
wangchengww/Polygenic_Basis_Seedless_Grapes
Polygenetic Basis of Seedlessness in Grapevine (Vitis vinifera L.)
wangchengww/RatesOfAdaptation
Estimating the rates of adaptive evolution in fungal species using whole-genome sequences
wangchengww/SCORPIOS
SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
wangchengww/Script-in-PopGenetics
群体遗传学分析中用到的script和skill等
wangchengww/single_cell_tutorial
单细胞分析的中文pipeline
wangchengww/snpArcher
Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
wangchengww/TE-workflows
Snakemake workflows for analyzing and visualizing transposable elements
wangchengww/Vargas-Chavez_et_al_2024_Chromosome_shattering_clitellate_origins
Repository for code and files related to the manuscript Vargas-Chávez et al. 2024. A punctuated burst of massive genomic rearrangements by chromosome shattering and the origin of non-marine annelids
wangchengww/Vertebrate_Chemoreceptors_mining
Full automatic pipelines to mine OR, TAAR, V2R and V1R genes from any vertebrate genome
wangchengww/WisentGenomeAssembly
Scripts and pipelines used in the preprint Bortoluzzi et al. (2024)
wangchengww/zju-icicles
浙江大学课程攻略共享计划