Pinned Repositories
AG_crossover
AG_crossover
angsd-wrapper
A project for extending ANGSD
apomixis_parallel_evolution
A groups of data and scripts in the analysis
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
coevolution_mitochondrial_nuclear
conservation_genomics
CrossBase
EIG
Eigen tools by Nick Patterson and Alkes Price lab
Haplotype-diversity
This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“
Sniffles_vcf_2_vg_vcf
output from Sniffles and filter with read by vg input
wangnan9394's Repositories
wangnan9394/apomixis_parallel_evolution
A groups of data and scripts in the analysis
wangnan9394/coevolution_mitochondrial_nuclear
wangnan9394/conservation_genomics
wangnan9394/Sniffles_vcf_2_vg_vcf
output from Sniffles and filter with read by vg input
wangnan9394/AG_crossover
AG_crossover
wangnan9394/angsd-wrapper
A project for extending ANGSD
wangnan9394/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
wangnan9394/CrossBase
wangnan9394/EIG
Eigen tools by Nick Patterson and Alkes Price lab
wangnan9394/Haplotype-diversity
This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“
wangnan9394/ngsF
Estimation of per-individual inbreeding coefficients under a probabilistic framework
wangnan9394/polyGembler
wangnan9394/sweet_orange_genomics
wangnan9394/vcfToHaploytypeTrees
Starting with a phased (e.g. with beagle) VCF, parse into independent loci, build alignment files with reference, pull in ax/tig data, build trees, and visualize