wikipathways/SPARQLQueries

Suggested query: List pathways without curation tags

khanspers opened this issue · 2 comments

Sometimes I find pathways that don't have any curation tags, so even if they are actually complete, they are not included in the analysis set. Also, since they don't have any other tags, they don't show up in the admin curation protocol. So they are effectively invisible. Is it possible to create a SPARQL query to find them?

egonw commented

No (something I only realized now), because the convertor only converts Curated and Reactome into RDF.

egonw commented

Okay, it was late... yes, for the release RDF I was right, but of course, with the RDF for all pathways, not. It seems to work:

image

You can find them here: https://jenkins.bigcat.unimaas.nl/job/WikiPathways%20Expert%20Curation%20-%20Daily%20All/lastCompletedBuild/testReport/

And then look in that list for General.noTag.