wrpearson/fasta36

Issues

• How I can intall fast36?

  #65 opened a month ago by Shyer-coma
  1

• ssearch36 library size limit of 45000 sequences?

  #60 opened 2 months ago by brush111111111111
  3

• Identity differs with different options

  #62 opened 2 months ago by yzhang-github-pub
  1

• make: error: ‘for’ loop initial declarations are only allowed in C99 mode

  #58 opened 2 months ago by jonathandmoore
  1

• lalign36 segmentation fault

  #61 opened 2 months ago by ehgunther
  1

• Build fails with LTO due to type mismatch

  #63 opened 2 months ago by eli-schwartz
  2

• Effective search space

  #59 opened 9 months ago by rmhubley
  2

• Different results for single-sequence FASTA query than same sequene in multi-FASTA query

  #57 opened a year ago by jonathandmoore
  3

• Instruction Windows build

  #56 opened a year ago by Zombach
  0

• wishes or remarks about LALIGN

  #55 opened a year ago by peutch
  3

• DLL for fasta36

  #54 opened a year ago by SaierLaboratory
  5

• Missing sequence in fasta query file results in infinite loop

  #38 opened a year ago by flange-ipb
  1

• remark about the help message regarding the matrices (option -s)

  #52 opened a year ago by peutch
  1

• remark regarding the output provided when using option -m 9

  #51 opened 2 years ago by peutch
  1

• Feature request: add query and subject length to tabular output

  #50 opened 2 years ago by yzhang-github-pub
  2

• Cannot allocate buffer 3000002

  #49 opened 2 years ago by Zombach
  1

• Why is FASTA called FASTA?

  #45 opened 2 years ago by Maithy15
  1

• Number of hits in output

  #48 opened 2 years ago by jtremblay
  4

• Win Comp Error

  #47 opened 2 years ago by Zombach
  2

• Bug in dealing with dir name?

  #46 opened 2 years ago by yzhang-github-pub
  5

• [Documentation] Clarification for the main README, e. g. most-up-to-date fasta (or not) and so forth

  #39 opened 2 years ago by rubyFeedback
  1

• map_db and .xin files

  #43 opened 2 years ago by gundizalv
  2

• can't open library issue

  #42 opened 3 years ago by sbaheti84
  2

• Just reporting arm64 works

  #41 opened 3 years ago by gaboentropy
  0

• M1/arm

  #40 opened 3 years ago by gaboentropy
  2

• Makefile errors (C99 mode, i redefined, MPI, etc.)

  #37 opened 3 years ago by sjfleck
  3

• Translation table 9 is not applied (parameter -t 9)

  #34 opened 3 years ago by flange-ipb
  5

• ssearch36 multithreaded output not consistent

  #36 opened 3 years ago by kenietz
  3

• Some special sequence IDs are altered in the result output

  #29 opened 3 years ago by flange-ipb
  3

• Use different penalty scores for two ends of the DNA sequence

  #33 opened 3 years ago by misik
  1

• Undefined behavior with strncpy when source and destination buffer overlap

  #32 opened 3 years ago by orbitcowboy
  2

• *** stack smashing detected ***: terminated on the ENA PRO division

  #31 opened 3 years ago by olivierfriard
  9

• Compile fasta36 binaries as shared libraries instead

  #27 opened 3 years ago by jjtapia
  5

• Parseable output format (-m 10): wrong scores printed for subsequent hit

  #30 opened 3 years ago by flange-ipb
  3

• FASTA truncates long paths

  #26 opened 4 years ago by shelkmike
  3

• gap extension penalty (-g) option does not work with glsearch36 nw score calculation

  #11 opened 4 years ago by misik
  2

• glsearch36 and similarity

  #23 opened 4 years ago by RamilNurtdinov
  7

• use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp'

  #20 opened 4 years ago by tseemann
  3

• supporting Unicode encoded files

  #18 opened 4 years ago by peutch
  1

• Sliding window searches

  #16 opened 4 years ago by susheelbhanu
  1

• v36.3.8g build fails on undeclared variable

  #22 opened 4 years ago by mathog
  6

• Result is "unpredictable" if library_file contains more sequences

  #21 opened 5 years ago by ondra-m
  2

• Warning - unrecognized residue

  #19 opened 5 years ago by TimothyStephens
  2

• ggsearch

  #17 opened 5 years ago by gaboentropy
  3

• option -m 10 is not working

  #15 opened 6 years ago by olivierfriard
  2

• Ambiguous bases are they supported?

  #12 opened 6 years ago by Sn0flingan
  1

• *** error [comp_lib9.c:642] cannot open library

  #14 opened 6 years ago by Amrithasuresh
  2

• ssearch36 segfaults above ~62k peptide sequences

  #13 opened 6 years ago by petersbr
  13

• incomplete results with glsearch36

  #9 opened 6 years ago by misik
  1

• Errors when I install fasta36 on ubuntu36

  #10 opened 6 years ago by wangzhennan14
  1