Pinned Repositories
dysbiosisR
The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
cowplot
cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2
demux-snakemake
Small pipeline to demultiplex fastq-files.
FEAST
FEAST adjusted as described by ETaSky.
good-enough-project
A good enough project template for writing reproducible code
mbtools
R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
microbiomer
Package Containing Utility-functions to Work with Microbiota-data.
plane.R
Simple R-code implementing the calculation of a reference-plane (Halfvarson, Nat Microbiol, 2017) in R instead of python.
SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
wsteenhu's Repositories
wsteenhu/plane.R
Simple R-code implementing the calculation of a reference-plane (Halfvarson, Nat Microbiol, 2017) in R instead of python.
wsteenhu/demux-snakemake
Small pipeline to demultiplex fastq-files.
wsteenhu/FEAST
FEAST adjusted as described by ETaSky.
wsteenhu/good-enough-project
A good enough project template for writing reproducible code
wsteenhu/mbtools
R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
wsteenhu/microbiomer
Package Containing Utility-functions to Work with Microbiota-data.
wsteenhu/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference