wwood/galah

Issues

• error: unexpected argument '-d' found

  #44 opened a year ago by xvazquezc
  2

• skani is not parallelized in `galah cluster`

  #36 opened a year ago by apcamargo
  2

• Finch running time

  #32 opened 2 years ago by AroneyS
  1

• add bindash support instead of dashing

  #27 opened 2 years ago by jianshu93
  1

• unnecessary fastani check

  #31 opened 2 years ago by wwood
  0

• Failed to find sufficient version of dashing

  #29 opened 2 years ago by michoug
  1

• checkM table not working

  #28 opened 2 years ago by Sanrrone
  1

• Compilation error

  #26 opened 2 years ago by Rridley7
  2

• Wrong genome annotation

  #23 opened 2 years ago by SilasK
  0

• Low quality genomes end up as seperate species.

  #22 opened 2 years ago by SilasK
  0

• Intermediate output

  #21 opened 2 years ago by SilasK
  0

• Dashing failed

  #19 opened 3 years ago by SilasK
  1

• If input genomes are short, they don't cluster

  #18 opened 3 years ago by wwood
  0

• Regarding galah output

  #17 opened 3 years ago by ShailNair
  6

• dashing2 instead of dashing1

  #16 opened 3 years ago by jianshu93
  0

• sketches in pre-cluster for a little bit distant related genomes

  #14 opened 3 years ago by jianshu93
  4

• --min-aligned-fraction, as fraction?

  #13 opened 3 years ago by aistBMRG
  0

• Dereplicate MAGs on strain level

  #9 opened 4 years ago by alienzj
  2

• Galah not clustering MAGs with ANI greater than the threshold

  #7 opened 5 years ago by apcamargo
  3

• Update fastANI requirement to 1.31

  #6 opened 5 years ago by apcamargo
  1

• Question about clustering mechanism

  #5 opened 5 years ago by MrOlm
  3

• Option to save cluster representative

  #3 opened 5 years ago by apcamargo
  5

• [Question] MAG quality score

  #1 opened 5 years ago by apcamargo
  8