yangjl

yangjl's Stars

• jupyterlab/jupyterlab

  JupyterLab computational environment.

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• deepstreamIO/deepstream.io

  deepstream.io server

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• sferik/t-ruby

  A command-line power tool for Twitter.

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• yhat/rodeo

  A data science IDE for Python

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• Rdatatable/data.table

  R's data.table package extends data.frame:

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• johnmyleswhite/ML_for_Hackers

  Code accompanying the book "Machine Learning for Hackers"

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• mpld3/mpld3

  An interactive data visualization tool which brings matplotlib graphics to the browser using D3.

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• mavam/stat-cookbook

  :orange_book: The probability and statistics cookbook

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• HazyResearch/deepdive

  DeepDive

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• pysam-developers/pysam

  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

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• RILAB/statements

  Successful Job Applications and Grants

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• BenLangmead/bowtie2

  A fast and sensitive gapped read aligner

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• samtools/hts-specs

  Specifications of SAM/BAM and related high-throughput sequencing file formats

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• marcelm/cutadapt

  Cutadapt removes adapter sequences from sequencing reads

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• WinVector/zmPDSwR

  Example R scripts and data for "Practical Data Science with R" 1st edition by Nina Zumel and John Mount (Manning Publications)

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• johnmyleswhite/MLNotes

  Very concise notes on machine learning and statistics.

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• bcgsc/abyss

  :microscope: Assemble large genomes using short reads

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• BenLangmead/bowtie

  An ultrafast memory-efficient short read aligner

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• pjotrp/bioinformatics

  Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics

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• mfumagalli/ngsTools

  Programs to analyse NGS data for population genetics purposes

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• jseidman/hadoop-R

  Example code for running R on Hadoop

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• KHP-Informatics/ngseasy

  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

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• dzerbino/oases

  De novo transcriptome assembler for short reads

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• ssaw/pegasos

  An sklearn-like python package for pegasos models

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• VertebrateResequencing/vr-pipe

  Generic pipeline system

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• CartwrightLab/SoFoS

  Rescale genetic polymorphism data to match a common sample size.

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• tvkent/Pi-Between

  Using ANGSD and Python/R to calculate and plot pi-between in windows along the genome

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• yangjl/imputeR

  Impute GBS genotype

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• vsbuffalo/TxDb.Zmays.Ensembl.AGPv2.17

  Transcript database for Zea mays Ensembl AGPv2.17

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• yangjl/methylome_evolution

  mSFS using a teosinte natural population

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