Pinned Repositories
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
DBiT-Notes
Learning notes for DBiT-Notes_mark image with Ai
DBiT-seq
Hiplex_proteome
This is the repository for hiplex proteome sequencing project.
MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
preseq
Software for predicting library complexity and genome coverage in high-throughput sequencing.
Spatial_epigenome-transcriptome_co-sequencing
st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
workshop-epigenomics-RTDs
workshop website on readthedocs
yonda310's Repositories
yonda310/DBiT-Notes
Learning notes for DBiT-Notes_mark image with Ai
yonda310/DBiT-seq
yonda310/Hiplex_proteome
This is the repository for hiplex proteome sequencing project.
yonda310/Spatial_epigenome-transcriptome_co-sequencing
yonda310/st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
yonda310/workshop-epigenomics-RTDs
workshop website on readthedocs
yonda310/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
yonda310/bcd_nano_CUTnTag
yonda310/MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
yonda310/preseq
Software for predicting library complexity and genome coverage in high-throughput sequencing.
yonda310/spatial-CUT-Tag
yonda310/Spatial_ATAC-seq
yonda310/test
yonda310/CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
yonda310/deepTools
Tools to process and analyze deep sequencing data.
yonda310/MACS
MACS -- Model-based Analysis of ChIP-Seq
yonda310/nanoscope
yonda310/scRNA-seq
yonda310/SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
yonda310/STAR
RNA-seq aligner
yonda310/STvEA
Spatially-resolved Transcriptomics via Epitope Anchoring
yonda310/workshop-scRNAseq1
Single cell RNA sequencing analysis course