ys08

ys08's Stars

• openai/improved-diffusion

  Release for Improved Denoising Diffusion Probabilistic Models

  Language:Python3.1k478

• immunogenomics/presto

  Fast Wilcoxon and auROC

  Language:Jupyter Notebook15434

• vnmabus/rdata

  Reader of R datasets in .rda format, in Python

  Language:Python452

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k595

• albert-espin/snn-clustering

  Shared Nearest Neighbor Clustering Algorithm: Implementation and Evaluation

  Language:Python225

• UMCUGenetics/MutationalPatterns

  R package for extracting and visualizing mutational patterns in base substitution catalogues

  Language:R10445

• mims-harvard/SHEPHERD

  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases

  Language:HTML4112

• rusty1s/pytorch_cluster

  PyTorch Extension Library of Optimized Graph Cluster Algorithms

  Language:C++813146

• mli/autocut

  用文本编辑器剪视频

  Language:Python6.6k656

• CellProfiling/SingleCellProteogenomics

  Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model

  Language:Python135

• graph4ai/graph4nlp

  Graph4nlp is the library for the easy use of Graph Neural Networks for NLP. Welcome to visit our DLG4NLP website (https://dlg4nlp.github.io/index.html) for various learning resources!

  Language:Python1.7k201

• mims-harvard/TDC

  Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science

  Language:Jupyter Notebook982170

• 10XGenomics/cellranger

  10x Genomics Single Cell Analysis

  Language:Rust34992

• CGATOxford/UMI-tools

  Tools for handling Unique Molecular Identifiers in NGS data sets

  Language:Python480190

• Vivianstats/scImpute

  Accurate and robust imputation of scRNA-seq data

  Language:R9134

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++707271

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.2k595

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.1k963

• soedinglab/MMseqs2

  MMseqs2: ultra fast and sensitive search and clustering suite

  Language:C1.4k190

• ogotoh/spaln

  Genome mapping and spliced alignment of cDNA or amino acid sequences

  Language:C++9014

• wwood/kingfisher-download

  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

  Language:Python24137

• raphael-group/hotnet2

  HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network

  Language:Python10043

• schulter/EMOGI

  An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.

  Language:Jupyter Notebook13833

• marbl/Mash

  Fast genome and metagenome distance estimation using MinHash

  Language:C++38691

• cov-lineages/pango-designation

  Repository for suggesting new lineages that should be added to the current scheme

  Language:Jupyter Notebook1k97

• nextstrain/nextclade

  Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

  Language:Rust21458

• roblanf/sarscov2phylo

  Global phylogenies of SARS-CoV-2 sequences

  Language:Shell8622

• MrOlm/drep

  Rapid comparison and dereplication of genomes

  Language:Python24736

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k502

• benedekrozemberczki/karateclub

  Karate Club: An API Oriented Open-source Python Framework for Unsupervised Learning on Graphs (CIKM 2020)

  Language:Python2.1k245