yuhsinhsieh-josch

yuhsinhsieh-josch's Stars

• ohmybash/oh-my-bash

  A delightful community-driven framework for managing your bash configuration, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

  Language:Shell6k72310666

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.3k261k352

• bowang-lab/scGPT

  Language:Jupyter Notebook1k33234205

• pachterlab/BI-BE-CS-183-2023

  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

  Language:Jupyter Notebook4369371

• Teichlab/scg_lib_structs

  Collections of library structure and sequence of popular single cell genomic methods

  Language:HTML434321391

• dylkot/cNMF

  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

  Language:Jupyter Notebook27669657

• RGLab/MAST

  Tools and methods for analysis of single cell assay data in R

  Language:R2281017957

• saezlab/decoupleR

  R package to infer biological activities from omics data using a collection of methods.

  Language:R19369524

• BlakeRMills/MoMAColors

  Color Schemes based around artwork and the Museum of Modern Art.

  Language:R189226

• HelenaLC/muscat

  Multi-sample multi-group scRNA-seq analysis tools

  Language:R1631412233

• mhw32/multimodal-vae-public

  A PyTorch implementation of "Multimodal Generative Models for Scalable Weakly-Supervised Learning" (https://arxiv.org/abs/1802.05335)

  Language:Python1544536

• kundajelab/chrombpnet

  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

  Language:Jupyter Notebook1223912734

• probabilisticai/probai-2023

  Materials of the Nordic Probabilistic AI School 2023.

  Language:Jupyter Notebook866018

• talperetz/notebook-copilot

  From Thoughts to Well-Crafted Jupyter Notebook at Record-Speed

  Language:Python85344

• datasciencelabs/2023

  Language:SCSS7211043

• suinleelab/contrastiveVI

  Language:Python48781

• KlugerLab/DAseq

  Language:R395135

• andrewcharlesjones/pcpca

  Probabilistic contrastive principal component analysis (PCPCA)

  Language:Python24305

• YosefLab/mrvi_archive

  Multi-resolution Variational Inference

  Language:Python22446

• loosolab/scanpro

  Language:Jupyter Notebook16231

• theislab/multigrate

  Multigrate: multiomic data integration for single-cell genomics

  Language:Python153126

• MarioniLab/oor_design_reproducibility

  Language:Jupyter Notebook141181

• MarioniLab/oor_benchmark

  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data

  Language:Python13122

• andrewcharlesjones/cplvm

  Contrastive Poisson latent variable models (CPLVMs)

  Language:Python11134

• EraslanBas/PerturbDecode

  An end-to-end computational pipeline for large Perturb-seq screens

  Language:Jupyter Notebook11112

• linnarsson-lab/chromograph

  Camiel's scATAC-seq analysis pipeline

  Language:Python10101

• calebclayreagor/DELAY

  Depicting pseudotime-lagged causality for accurate gene-regulatory inference

  Language:Python5100

• corceslab/ArchRCells

  ArchR Metacell creation from SEACells

  2100

• yuhsinhsieh-josch/multiSAP

  Multiome Sequencing Analysis Pipeline

  Language:HTML2000

• cfusterot/multiSAP

  Multiome Sequencing Analysis Pipeline

  Language:HTML1141