Issues
- 0
Can NOT install MAST
#189 opened by nhu-github - 0
DEG counts are associated with the number of cells
#188 opened by ZunpengLiu - 0
- 10
Error in getClassDef(x@superClass, package = packageSlot(x))@virtual : no applicable method for `@` applied to an object of class "NULL"
#184 opened by nfancy - 1
Got error when using summary(zlmCond.glmer)
#186 opened by fnhe - 3
- 0
- 7
Error in validObject(.Object): invalid class “corMatrix” object: 'sd' slot has nonfinite elements
#180 opened by derrik-gratz - 5
MAST uses all cores even after setting mc.cores
#152 opened by fbnrst - 6
"R CMD check" failure on Linux ARM64
#179 opened by martin-g - 0
lrTest's with CoefficientHypothesis and contrast matrix give inconsistent results
#178 opened by ImNotaGit - 10
- 0
p values not reported for all features
#177 opened by susheelbhanu - 1
FindAllMarkers issue
#176 opened by andrew2k - 2
- 2
- 0
Low logFCs and failure to converge?
#173 opened by learning-MD - 7
- 6
- 1
LFC interpretation
#167 opened by rajewski - 15
- 3
Restricted Maximum Likelihood or Maximum Likelihood for estimating parameters in mixed effect model using MAST?
#157 opened by sofiapuvogelvittini - 3
- 1
- 0
What should I do with the "NaN" values, with extremely small `Pr(>Chisq)` in the `coef` column of the `summary(zlmCond)` result?
#168 opened by danli349 - 5
gseaAfterBoot enriched genes
#154 opened by EBosi - 0
Applicability of MAST to spatial transcriptomics analyses without single-cell resolution
#166 opened by jeremycfd - 1
When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
#165 opened by danli349 - 1
time course DE analysis
#164 opened by shokohirosue - 2
Multiple variables, single coefficient
#163 opened by kanefos - 1
Comparisons among three conditions
#161 opened by sofiapuvogel - 2
p value = 0
#160 opened by shokohirosue - 2
GSEA background sets of genes
#159 opened by sofiapuvogel - 9
Selecting count data in zlm function
#158 opened by IrSoler - 1
Segmentation fault
#156 opened by Santos22903 - 2
Deviance
#155 opened by sofiapuvogelvittini - 1
- 0
- 2
Changes to Matrix::rankMatrix break tests
#149 opened by amcdavid - 4
- 7
Error in zlm
#145 opened by Samantha-Czn - 4
Error: grouping factors must have > 1 sampled level
#146 opened by esrasefik - 6
Resource requirements for large sparse matrices
#138 opened by combiz - 3
DE between different groups : post-hoc tests?
#139 opened by fabien-tell - 2
- 5
Discrepancy between including factors as covariates directly vs hard-coding dummy variables
#144 opened by jmchan88 - 9
warning messages: In rbind(...) : number of columns of result is not a multiple of vector length
#143 opened by wangjingshen - 5
- 5
Units of logFC for a numeric dependent variable
#140 opened by combiz - 2
P-value vs. log fold change discrepancies when fitting a model with a covariate
#137 opened by argschwind