yujing1997

convoca

Predict and analyze cellular automata using convolutional neural networks

deep_cox_mixtures

Code for the paper "Deep Cox Mixtures for Survival Regression", Machine Learning for Healthcare Conference 2021

DeepPATH

Classification of Lung cancer slide images using deep-learning

genomic-scoring-breast-cancer-progression

Project in which we use image based chromatin(NMCO) features to identify abnormal cells in TMA

hact-net

HAIM

This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publication in Nature Machine Intelligence (Soenksen LR, Ma Y, Zeng C et al. 2022).

hs2p

Histopathology Slides Preprocessing Pipeline

Image_Segmentation

pytorch Implementation of U-Net, R2U-Net, Attention U-Net, Attention R2U-Net.

keras

Deep Learning for humans

LLM-For-Survival-Analysis

yujing1997/LLM-For-Survival-Analysis

yujing1997/MedLlama-QA-Advanced-Medical-Question-Answering-with-Llama-2-7b-and-RAG

Utilizing Llama-2-7b and RAG, this medical QA system ensures precise, contextually accurate answers. With advanced embeddings and a robust tech stack, MedLlama-QA achieves superior accuracy, reducing hallucinations and outperforming standard language models.

yujing1997/MEREDITH

yujing1997/Awesome-Medical-Dataset

Collection of awesome medical dataset resources.

yujing1997/Awesome-Multimodal-Large-Language-Models

:sparkles::sparkles:Latest Advances on Multimodal Large Language Models

yujing1997/awesome-self-supervised-learning-for-tabular-data

A collection of research materials on SSL for non-sequential tabular data (SSL4NSTD)

yujing1997/chromark

Code for the manuscript: "Single-cell imaging-AI based chromatin biomarkers for diagnosis and therapy evaluation in tumor patients using liquid biopsies". Code was developed by Daniel Paysan

yujing1997/DataSynthesizer

yujing1997/faiss

A library for efficient similarity search and clustering of dense vectors.

yujing1997/FeatureAnalysisExploratory

yujing1997/foundation-cancer-image-biomarker

Code and evaluation repository for the paper

yujing1997/Histopathology-Datasets

Ressources of histopathology datasets

yujing1997/langgraph

Build resilient language agents as graphs.

yujing1997/luna

Scripts for data processing

yujing1997/marugoto

Tools to build deep learning pipelines.

yujing1997/MedSAMSlicer

3D Slicer Plugin for Segment anything in medical images

yujing1997/MM-LLM-RO

yujing1997/Multimodal-CustOmics

Multimodal CustOmics: A Unified and Interpretable Multi-Task Deep Learning Framework for Multimodal Integrative Data Analysis in Oncology

yujing1997/nnet-survival

Discrete-Time Survival Model for Neural Networks

yujing1997/ollama-python

Ollama Python library

yujing1997/penzai

A JAX research toolkit for building, editing, and visualizing neural networks.

yujing1997/prov-gigapath

Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data

yujing1997/PubmedRAG

yujing1997/Segment-Everything-Everywhere-All-At-Once

[NeurIPS 2023] Official implementation of the paper "Segment Everything Everywhere All at Once"

yujing1997/self-biorag

ISMB'24 "Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models"

yujing1997/STAMP

Solid Tumor Associative Modeling in Pathology

yujing1997/TCGA-lung-histology-download

Downloading and Creating labels for the TCGA lung Whole Slide Images

yujing1997/title-abstract-screening-ai

yujing1997/torchchat

Run PyTorch LLMs locally on servers, desktop and mobile

yujing1997/Word_to_Latex

A program to automatically turn large word document (>100 pages) with images into a compressed latex document zipped folder that can be directly uploaded to Overleaf.