yujing1997

convoca

Predict and analyze cellular automata using convolutional neural networks

deep_cox_mixtures

Code for the paper "Deep Cox Mixtures for Survival Regression", Machine Learning for Healthcare Conference 2021

DeepPATH

Classification of Lung cancer slide images using deep-learning

genomic-scoring-breast-cancer-progression

Project in which we use image based chromatin(NMCO) features to identify abnormal cells in TMA

hact-net

HAIM

This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publication in Nature Machine Intelligence (Soenksen LR, Ma Y, Zeng C et al. 2022).

hs2p

Histopathology Slides Preprocessing Pipeline

Image_Segmentation

pytorch Implementation of U-Net, R2U-Net, Attention U-Net, Attention R2U-Net.

keras

Deep Learning for humans

LLM-For-Survival-Analysis

yujing1997/genomic-scoring-breast-cancer-progression

Project in which we use image based chromatin(NMCO) features to identify abnormal cells in TMA

yujing1997/hact-net

yujing1997/LyricsGenius

Download song lyrics and metadata from Genius.com 🎶🎤

yujing1997/pe_fusion

yujing1997/anonymize-slide

Delete the label from a whole-slide image

yujing1997/breast_cancer_classifier

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

yujing1997/cardiac_fnn_ca_cnn

Creating synthetic FHN data where each value corresponds to an equivalent state in CA

yujing1997/COVID-Net

COVID-Net model for COVID-19 detection on COVIDx dataset

yujing1997/covid19_weak_supervision

WACV2021 - A Weakly Supervised Consistency-based Learning Method for COVID-19 Segmentation in CT Images

yujing1997/DeepLearningHNSCC

Deep Learning Survival Models for HNSCC

yujing1997/DeepSurv

DeepSurv is a deep learning approach to survival analysis.

yujing1997/dynamic

EchoNet-Dynamic is a deep learning model for assessing cardiac function in echocardiogram videos.

yujing1997/FAST-Pathology

⚡ Open-source software for deep learning-based digital pathology

yujing1997/H-AI-L

A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)

yujing1997/HistomicsTK

A Python toolkit for pathology image analysis algorithms.

yujing1997/ICCV-CDPATH2021-ID-8

Official code for "Improving Self-supervised Learning with Hardness-aware Dynamic Curriculum Learning: An Application to Digital Pathology", accepted in ICCV, 2021, CDpath Workshop.

yujing1997/magic_castle

Terraform modules to replicate a Compute Canada cluster in the cloud

yujing1997/mdph612-webapp-histo

A web application to extract cell spacing and nucleus radius distribution of each digital histopathological image sample.

yujing1997/medomics_NatCancer

yujing1997/Multi-modal-Multi-instance-Learning

yujing1997/multi-scale-tools

yujing1997/multisurv

Multimodal deep learning model for long-term cancer survival prediction

yujing1997/PR_survival_Prediction

yujing1997/quip_cnn_segmentation

CNN based segmentation codes

yujing1997/scihub.py

Python API and command-line tool for Sci-Hub

yujing1997/SEIR_COVID19

SEIR model for COVID-19 infection, including different clinical trajectories of infection

yujing1997/SirIsaac

Automated dynamical systems inference

yujing1997/social-distancing-simulator

An artificial simulation of social distancing in the time of an epidemic.

yujing1997/SSL_CR_Histo

Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" accepted at Medical Image Analysis (MedIA), 2021.

yujing1997/SST

Self-Supervised Generative Style Transfer for One-Shot Medical Image Segmentation