zhangzlab/covid_balf

Issues

• 10x chemistry of samples

  #23 opened a year ago by mxposed
  2

• Healthy samples only have CD45+ cells, will it affect subsequent analysis such as drawing cell ratio maps?

  #22 opened 2 years ago by realmanlxw
  4

• object 2-Macrophage.rds

  #21 opened 2 years ago by acebollada80
  3

• ZNF683+ CD8 T cells

  #20 opened 2 years ago by BingjieZhang
  0

• Confusion regarding 10x technology used for each sample only having two fastq.gz?

  #19 opened 3 years ago by lelesama
  5

• Python script for TCR

  #18 opened 3 years ago by f6v
  0

• SARS-CoV-2 genes in count matrix

  #17 opened 4 years ago by MarcElosua
  1

• How can I find _bp.txt?

  #16 opened 4 years ago by chenxofhit
  2

• duplicate barcodes

  #15 opened 4 years ago by dm8000
  1

• confusion regarding 10x technology used for each sample

  #14 opened 4 years ago by Xiaojieqiu
  5

• ID in all.cell.annotation.meta.txt does not correspond to Barcodes in GEO .h5 files

  #6 opened 5 years ago by djinnome
  3

• balf_1.txt

  #7 opened 4 years ago by maximilianh
  6

• why "first generate data and scale data in RNA assay"?

  #13 opened 4 years ago by yingyonghui
  1

• Why no upper limit on nCount_RNA?

  #12 opened 4 years ago by uberholzer
  1

• Control Sex effects during scaling and DEG analysis

  #10 opened 4 years ago
  2

• 2-Macrophage.rds and 6-NKT.rds files

  #11 opened 4 years ago by ShipraGupta16
  4

• doublet rate in samples

  #9 opened 4 years ago by tilofrei
  2

• nCoV.rds avaiability

  #8 opened 4 years ago by Diozao666
  2

• Read10X_h5 to read filtered matrix in GEO dataset?

  #5 opened 4 years ago by asmariyaz23
  3

• Batch effect controlled in FindAllMarkers after IntegrateData?

  #2 opened 5 years ago by malisas
  2

• marker file

  #4 opened 5 years ago by biooo
  0

• Why ScaleData twice?

  #3 opened 5 years ago by uberholzer
  2

• Unclear naming between manuscript, code and GEO data.

  #1 opened 5 years ago by talban14
  1