zhutao1009

zhutao1009's Stars

• ncbi/egapx

  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation

  Language:Nextflow765

• symgenoevolab/SyntenyFinder

  SyntenyFinder contains a collection of scripts to easily perform and visualize macrosynteny analysis when provided with the accessions of annotated chromosome-level genome assemblies from NCBI.

  Language:Jupyter Notebook166

• learnbyexample/learn_perl_oneliners

  Example based guide for text processing with Perl from the command line

  Language:Shell10514

• Joker-Jerome/UTMOST

  UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association analyses.

  Language:Python3216

• liyangjie/PPNet

  Identifying functional association networks by phylogenetic profiling of prokaryotic genomes

  Language:Python2

• fadli0029/DeepTIPP

  DeepTIPP: Deep learning Integration for Phylogenetic Profiling and Taxonomic Identification

  Language:Python1

• DessimozLab/HogProf

  Phylogenetic profiling with orthology data

  Language:Jupyter Notebook92

• BIONF/PhyloProfile

  A phylogenetic profile analysis tool

  Language:R329

• patrickbryant1/SpeedPPI

  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning

  Language:Python7717

• lh3/minipileup

  Simple pileup-based variant caller

  Language:C816

• citiususc/veryfasttree

  Efficient phylogenetic tree inference for massive taxonomic datasets

  Language:C++1105

• Visualize-ML/FRM

  FRM七本书配套代码

  38752

• thackl/gggenomes

  A grammar of graphics for comparative genomics

  Language:R59364

• hillerlab/TOGA

  TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

  Language:Python15823

• xuelingyi/SLRfinder

  SLRfinder is a method for identifying candidate sex-linked regions (SLRs) based on heterozygosity and linkage disequilibrium (LD) clustering using population genomic data.

  Language:R4

• veg/hyphy-analyses

  HyPhy standalone analyses

  Language:PostScript3817

• PKU-YuanGroup/Open-Sora-Plan

  This project aim to reproduce Sora (Open AI T2V model), we wish the open source community contribute to this project.

  Language:Python11.5k1k

• msternke/protein-consensus-sequence

  A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence

  Language:Python153

• waveygang/wfmash

  base-accurate DNA sequence alignments using WFA and mashmap3

  Language:C++17519

• dukecomeback/pal4nal.pl

  similar as what pal2nal.pl do, i.e. change protein alignment into CDS alignment, except some difference.

  Language:Perl41

• TheAlgorithms/Python

  All Algorithms implemented in Python

  Language:Python194k45.6k

• Gaius-Augustus/GALBA

  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

  Language:Perl1314

• ballesterus/UPhO

  Scripts for homology and orthology assessment from genomic sequences.

  Language:Python193

• etabari/PorthoMCL

  Parallel implementation of OrthoMCL

  Language:Python217

• iggredible/Learn-Vim

  Learning Vim and Vimscript doesn't have to be hard. This is the guide that you're looking for 📖

  13.7k1.1k

• genomeannotation/OrthoMCL-docker

  An OrthoMCL setup in a docker image

  Language:Shell46

• posquit0/Awesome-CV

  :page_facing_up: Awesome CV is LaTeX template for your outstanding job application

  Language:TeX23.1k4.8k

• kfuku52/nwkit

  Newick tree processing

  Language:Python51

• hakluke/how-to-exit-vim

  Below are some simple methods for exiting vim.

  7k315

• kfuku52/RADTE

  Divergence time estimation in the complex history of gene family evolution

  Language:Jupyter Notebook82