Question: What is the evaluation metric for protein function classification?

Question

Question: What is the evaluation metric for protein function classification?

boram915 opened this issue a year ago · 2 comments

Hello,
I want to know what evaluation metric is used for protein function classification.
I scrutinized the paper and code, but could not found how it was evaluated.
In the paper I found the description "4**%** improvement with transductive setting ..." but still cannot understand what is the percentage for.
I'd appreciate your reply.

Answer 1 · 2024-02-05T12:52:06.000Z

Hi,
We use evaluation metric F1 max for protein function prediction, which have been used in CAFA.

Answer 2 · 2024-02-07T15:47:14.000Z

hi, do you have further questions?