zkamvar
Research Software Engineer | Interested in education, pop genetics, evolution, bioinformatics, and R programming
@reichlabBeaverton, OR
Pinned Repositories
pegboard
R6 classes for exploring the content Carpentries Lessons :triangular_ruler:
sandpaper
User Interface for The Carpentries Workbench
sclerotinia-366
Analysis for "Population structure and phenotypic variation of *Sclerotinia sclerotiorum* from dry bean (*Phaseolus vulgaris*) in the United States"
poppr
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
beaverdown
An updated R Markdown thesis template using the bookdown package
config-files
A repository of my configuration files
diaper
a lightweight method of creating R package dependencies for a project OR "baby steps to reproducibility"
dissertation
Zhian Kamvar's Ph. D. dissertation from Oregon State University
notes-template
A template for notes written in markdown and rendered to html, pdf, and docx with pandoc
zkamvar's Repositories
zkamvar/poppr_msn_shiny
A shiny interface to the poppr function plot_poppr_msn.
zkamvar/365papers2016
An incomplete list of papers I read in 2016
zkamvar/poppr_frontiers
Repository for the article on poppr version 2.0 in FrontiersIn Plant Science
zkamvar/adv-r
Advanced R programming: a book
zkamvar/CardTrick
A simple card trick coded in R
zkamvar/covr
Test coverage reports for R
zkamvar/fitmodel
Automatically exported from code.google.com/p/fitmodel
zkamvar/genoid_infestans
Genotype ID for P. infestans
zkamvar/Genotype-ID
Genotyping ID using Shiny and Twitter Bootstrap to genotype using SSR's and Poppr for Phytophthora
zkamvar/Genotype_Iterators
Examples of genotype iteration utilized in Bruvo's distance in poppr
zkamvar/hierfstat
the hierfstat package
zkamvar/jammr
Weaponised R
zkamvar/labtools
An R package for lab notebook upkeep
zkamvar/Linarius
Linarius devlopment R Package for dominant marker analysis with mixed ploidy levels
zkamvar/mwe_eigen_segfault
A minimum working example for a segfault
zkamvar/poppr_rnw2rmd
Convert poppr's .Rnw manual to .Rmd to visualize in html
zkamvar/Presentation-APS2015
Code and notes for Zhian Kamvar's APS 2015 presentation: Evidence for at least two introductions of the sudden oak death pathogen into Oregon forests
zkamvar/python_scripts
Practice Python Scripts
zkamvar/RecursionHomework
Homework and notes from Recursion and Dynamic Programming half course
zkamvar/rr-init
Research project initialization and organization following reproducible research guidelines
zkamvar/rstackdeque
Stack and deque datatypes for R - fast and functional