zwets

Bioinformatician. Programming since 1980.

Zwets ITNetherlands

Pinned Repositories

kcri-cge-bap
KCRI CGE Bacterial Analysis Pipeline
Language:Python6 2 06
blast-galley
Precooked BLAST-related recipes, scripts and utilities
Language:Shell1 1 01
cge-bap
CGE Bacterial Analysis Pipeline
Language:Python1 1 00
gene-paths
Determine gene order and orientation in assemblies
Language:C++00
ident-16s
Rapid identification of bacterial species from FASTA contigs
Language:Shell2 1 11
kcri-cge-bap
KCRI CGE Bacterial Analysis Pipeline
Language:Python2 0 00
kcst
K-mer counting sequence typer
Language:C++1 1 20
picoline
Simplistic workflow and job control for on-machine pipelines
Language:Python0 1 00
taxo
Command line NCBI taxonomy browser
Language:Shell1 1 00
unfasta
Command-line pipes and filters for genomic sequence data
Language:Shell1 1 00

zwets's Repositories

zwets/kcri-cge-bap
KCRI CGE Bacterial Analysis Pipeline
Language:Python2 0 00
zwets/blast-galley
Precooked BLAST-related recipes, scripts and utilities
Language:Shell1 1 01
zwets/cge-bap
CGE Bacterial Analysis Pipeline
Language:Python1 1 00
zwets/fastq-utils
Simple utilities operating on FASTQ files
Language:C++1 1 0
zwets/sms-gateway
Secure and reliable delivery of SMS messages
Language:Java1 1 4
zwets/sms-scheduler
Secure and reliable delivery of scheduled SMS messages
Language:Java1 1 0
zwets/spa-type
Perform spa typing on Staphylococcus aureus assemblies or reads.
Language:Shell1 2 01
zwets/unfasta
Command-line pipes and filters for genomic sequence data
Language:Shell1 1 00
zwets/gene-paths
Determine gene order and orientation in assemblies
Language:C++00
zwets/commcare-cloud
Tools for standing up and managing a CommCare HQ server environment
Language:Python0 0
zwets/flowable-engine
A compact and highly efficient workflow and Business Process Management (BPM) platform for developers, system admins and business users.
Language:Java
zwets/freeipa-container
FreeIPA server and client in Docker containers; see hub.docker.com for the images:
Language:Shell0 0
zwets/frogs
Bioinformatics analysis of frog mitochondrion
Language:Shell1 0
zwets/gtdb-ident
Rapid taxonomic assignment against the GTDB
Language:Shell1 0
zwets/GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Language:Python0 0
zwets/htcondor
HTCondor source repository, formerly the Condor Project
Language:C++
zwets/jsmpp
SMPP implemented in Java
Language:Java0 0
zwets/kafka-message-scheduler
scheduler for kafka messages
Language:Go0 0
zwets/kafka-message-scheduler-admin
GUI for managing list of kafka message schedulers
Language:Go0 0
zwets/llm.c
LLM training in simple, raw C/CUDA
zwets/LPF
Local Pathogen Finder
Language:Python0 01
zwets/newick_utils
shell tools for processing phylogenetic trees
Language:C0 0
zwets/nextcloud-deps-deb
Ubuntu/Debian package to pull in NextCloud dependencies
1 0
zwets/odds-and-ends
Miscellaneous docs and scripts that needed a place to put them
Language:Shell
zwets/opensmpp
OpenSmpp - Java library implementing the SMPP protocol, and allowing development of External Short Message Entities (ESMEs) and more.
Language:Java0 0
zwets/phylo-utils
Small scripts and utils for working with phylogenetic trees
Language:Shell1 0
zwets/sc2calc
SARS-CoV-2 genomic coordinate converter
Language:Shell1 0
zwets/sms-client
CLI tools for managing and testing sms-scheduler and sms-gateway
Language:Java1 0
zwets/sshrew
Simple reverse SSH setup
Language:Shell
zwets/zwets.github.io
GitHub Pages for io.zwets.it
Language:HTML1 3