19831985

19831985's Stars

• slowkow/ggrepel

  :round_pushpin: Repel overlapping text labels away from each other in your ggplot2 figures.

  Language:R1.2k2521396

• YuLab-SMU/ggtree

  :christmas_tree:Visualization and annotation of phylogenetic trees

  Language:R85038506173

• YinLiLin/CMplot

  📊 Circular and Rectangular Manhattan Plot

  Language:R53915131114

• PoisonAlien/maftools

  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

  Language:R45222960223

• easystats/correlation

  :link: Methods for Correlation Analysis

  Language:R4371719456

• BGI-shenzhen/LDBlockShow

  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

  Language:Perl14554541

• h3abionet/h3agwas

  GWAS Pipeline for H3Africa

  Language:Nextflow108163366

• omerwe/polyfun

  PolyFun (POLYgenic FUNctionally-informed fine-mapping)

  Language:Python96218322

• stephenslab/mashr

  An R package for multivariate adaptive shrinkage.

  Language:R901410719

• cran/bnlearn

  :exclamation: This is a read-only mirror of the CRAN R package repository. bnlearn — Bayesian Network Structure Learning, Parameter Learning and Inference. Homepage: https://www.bnlearn.com/

  Language:C5710038

• YinLiLin/KAML

  :bicyclist: Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction

  Language:R4151512

• filipematias23/Bison-Fly

  Bison-Fly is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome UAV community (D2P). In this pipeline we are presenting step by step how we have been applying UAV data on our breeding program. This is a open source R code from where anyone can use and adept for different crops. All suggestions are welcome. Help us to build this platform in partnership with Drone2Phenome community.

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• MarcooLopez/Genomic-Selection

  Language:R233010

• 12HuYang/GridFree

  An App counts the number of components in an image.

  Language:Python21239

• filipematias23/Be-Breeder

  Be-Breeder 2.0 provides a series of functions and tools for phenotypic and molecular analyses to simulate and compare a wide range of breeding scenarios.

  Language:Roff7201

• filipematias23/Bison-Fly_Workshop_01

  In this workshop, I present step-by-step how we leverage UAV data in our breeding program. This is open source R code that anyone may use and adopt for different crops and situations. The Bison-Fly tutorial is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome (D2P). We hope this pipeline helps you with your research, and all suggestions to improve it are welcome.

  Language:R7301

• filipematias23/FIELDimageR-Workshop-11

  Workshop presented for NDSU Breeding Pipeline Database Managers. In this course, I went through the basic steps of the FIELDimageR pipeline showing how to evaluate and apply remote sensing data in plant breeding.

  Language:R5313

• filipematias23/FIELDimageR-Workshop-9

  Workshop presented for GEMS-UFSSER. In this course, I went through the basic steps of FIELDimageR pipeline showing how to evaluate and apply remote sensing data and lab images in plant breeding.

  Language:R5200

• mararie/SAMBAR

  R package SAMBAR

  Language:R4102

• slt666666/gene-cluster-matrix

  Visualize gene clusters & its phylogenetic relationships by interactive matrix figure.

  Language:Python30

• filipematias23/BGLR-R

  Language:R210

• slt666666/RILStEp

  Detect epistasis candidate SNP pair based on bayes factor

  Language:R2310

• 19831985/GridFree

  An App counts the number of components in an image.

  Language:Python1000

• bobymathew/Bayesian-Multilocus

  Bayesian-Multilocus contains R code for Bayesian Multilocus Estimation of two and three way epistasis presented in Mathew et al. (2018;Genetics):: https://www.genetics.org/content/208/2/525

  Language:R1200

• zhwang-hzau/CropPainter-master

  CropPainter-An effective and precise tool for trait-to-image crop visualization based on Generative Adversarial Networks

  Language:Python1110