ABCD Data Analytics and Informatics Resource Center
Data Analytics and Informatics Resource Center at UC San Diego
UC San Diego
Pinned Repositories
abcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
abcd_acs_raked_propensity
How to calculate raked propensity scores for the ABCD Study cohort
abcd_extract_eprime
scripts that extract task timing and behavioral metrics
analysis-nda
Collection of scripts to analyze ABCD release data
FIONASITE
Data upload site for FIONA site computer
geocoding
A framework for adding gelocation derived data to the ABCD study.
nda-abcd-collection-3165
This is the documentation repository for ongoing releases to the NDA collection 3165. Please add GitHub Issues here for requests or feedback.
nda-abcd-s3-downloader
Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.
redcap-to-nda
Exporting REDCap data dictionaries and data to the NIMH National Data Archive (NDA)
ABCD Data Analytics and Informatics Resource Center's Repositories
ABCD-STUDY/analysis-nda
Collection of scripts to analyze ABCD release data
ABCD-STUDY/nda-abcd-collection-3165
This is the documentation repository for ongoing releases to the NDA collection 3165. Please add GitHub Issues here for requests or feedback.
ABCD-STUDY/abcd_acs_raked_propensity
How to calculate raked propensity scores for the ABCD Study cohort
ABCD-STUDY/abcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
ABCD-STUDY/nda-abcd-s3-downloader
Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.
ABCD-STUDY/FIONASITE
Data upload site for FIONA site computer
ABCD-STUDY/abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
ABCD-STUDY/abcd_extract_eprime
scripts that extract task timing and behavioral metrics
ABCD-STUDY/redcap-to-nda
Exporting REDCap data dictionaries and data to the NIMH National Data Archive (NDA)
ABCD-STUDY/BPPCA_Neurocognition_Thompson_etal_2018
The Structure of Cognition in 9 and 10 year-old Children and Associations with Problem Behaviors: Findings from the ABCD Study’s Baseline Neurocognitive Battery.
ABCD-STUDY/fitbit-pipeline
Contains processing, direct alert generation, and scoring logic for ABCD Fitbit data
ABCD-STUDY/geocoding
A framework for adding gelocation derived data to the ABCD study.
ABCD-STUDY/gfa_ses
GFA for SES measures
ABCD-STUDY/ABCDWorkshop-reproducible-science
Material collection for the ABCD-DAIC workshops on data science
ABCD-STUDY/auto-scoring
Visual programming to calculate derived scores for REDCap
ABCD-STUDY/fMRI-cleanup
ABCD-STUDY/Minimally-Processed-Image-Sharing
ABCD-STUDY/abcd_docker
Dockerfile for creating the ABCD docker image
ABCD-STUDY/MeaningfulAssociations_Dick_etal_2021
This repository contains the statistic scripts (.R) for running the worked examples in the paper "Meaningful Associations in the Adolescent Brain Cognitive Development Study"
ABCD-STUDY/abcd-dev
A basic ABCD development environment running ubuntu, apache2 and php7
ABCD-STUDY/complete_row
REDCap extension module: Colors each row of an instrument - if a value has been provided. This will highlight rows with missing values to improve their visibility.
ABCD-STUDY/Tabulated-Data-Scripts
Contains scripts (internal and external) for creating abcd_imgincl csv file
ABCD-STUDY/abcd-ident
iPhone application to help identify participants for onsite visits
ABCD-STUDY/asttt
If this then that like framework for emails - great for studies with many users that all want to receive reports
ABCD-STUDY/eprime-data-clean
Convert E-Prime generated files (exported as csv) to propper CSV
ABCD-STUDY/family_history_problem_summary_scores
ABCD-STUDY/pelham-weighting-resources
Resources related to weighting of data in the ABCD Study.
ABCD-STUDY/qr-start-app
ABCD-STUDY/RSI
Code to fit a Restriction Spectrum Imaging Model to Diffusion MRI Data
ABCD-STUDY/visit-structure
Graphical visualization of the visit structure in a longitudinal project