Al-Murphy's Stars
google-deepmind/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
lh3/seqtk
Toolkit for processing sequences in FASTA/Q formats
duerrsimon/bioicons
A library of free open source icons for science illustrations in biology and chemistry
webermarcolivier/statannot
add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot
easimon/maximize-build-space
Github action to maximize the available disk space on Github runners
pinellolab/DNA-Diffusion
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
Pold87/academic-keyword-occurrence
Extracts the historic word occurrence of a search term in academic papers
deeptools/pyBigWig
A python extension for quick access to bigWig and bigBed files
Genentech/gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
jmschrei/tangermeme
Biological sequence analysis for the modern age.
omerwe/polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
calico/borzoi
RNA-seq prediction with deep convolutional neural networks.
neurogenomics/rworkflows
Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.
jmschrei/tfmodisco-lite
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
dohlee/chromoformer
The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
EdwinTh/dutchmasters
R package with colour palettes derived from famous paintings by 17th century Dutch masers :framed_picture:🎨 :man_artist:🇳🇱!
kundajelab/ENCODE_downloader
Downloader for ENCODE
pfizer-opensource/bigwig-loader
A fast dataloader for bigwig files made for machine learning
shtoneyan/gopher
Toolset for training quantitative sequence to function models.
p-koo/evoaug
Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics
yakirr/sldp
Signed LD profile regression code
mostafavilabuw/EnformerAssessment
kundajelab/yuzu
yuzu is a compressed-sensing based approach for quickly calculating in-silico mutagenesis saliency.
neurogenomics/EnformerCelltyping
Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) interactions to predict histone marks across diverse cell types.
vjcitn/BiocHail
Using hail via Basilisk
dragos-gruia/MSc-Neuroscience-Python-Course-Development
H-Mateus/dri-reproducibility-template
A standardised project template for incorporating best practices in reporducibility
dragos-gruia/MSc-TranslationalNeuroscience-Module3
ICL-BMB-BiDS/BIDS2-DimensionReduction1
This session is focussed on what dimension reduction is, what it can be used for and revolves around Principal Component Analysis (PCA).
neurogenomics/chromexpress
Which epigenetic factors are the best predictors of gene expression? An analysis using ENCODE data.