AllenCellModeling/aicsimageio

Issues

• Move test files out of old modeling AWS account

  #540 opened a month ago by SeanLeRoy
  1

• Turn off "Test Upstreams" Action

  #568 opened 4 months ago by evamaxfield
  1

• Data vs. Dims Dimensions Mismatch

  #565 opened 6 months ago by tejasthy
  0

• update README to point to bioio

  #567 opened 6 months ago by toloudis
  0

• Readme link to writer docs 404s from inside github

  #559 opened 7 months ago by JulianoGianlupi
  0

• Extract Physical Pixel Size from SEM TIFF metadata.

  #558 opened 7 months ago by gyger
  1

• tifffile dependency: version pin outdated?

  #555 opened 10 months ago by m-albert
  4

• Importing fails

  #554 opened a year ago by onurserce
  2

• Questions regarding compression method choice with OmeTiffWriter.save()

  #553 opened a year ago by AlanWu886
  2

• Remove ceiling on dependencies

  #552 opened a year ago by joshua-gould
  0

• Large timing overhead on TiffReader

  #550 opened a year ago by Armavica
  6

• TimeStamps

  #549 opened a year ago by ant-trullo
  0

• Specify resolution level for reading OME-Zarr

  #539 opened a year ago by tischi
  6

• dtype error converting Olympus VSI

  #515 opened a year ago by dyf
  8

• aicsimageio uses ome_types in a way that causes the emission of a warning

  #479 opened a year ago by anntzer
  3

• Tifffile error when accessing dims attribute

  #495 opened a year ago by jplumail
  9

• czi number of channels can be out of sync and is reported as error

  #532 opened a year ago by toloudis
  2

• main[base-imageio] failing due to Pillow

  #541 opened a year ago by SeanLeRoy
  0

• OME Zarr metadata files do not have newline characters at the end of files

  #462 opened a year ago by galenlynch
  3

• Feature: Add units to PhysicalPixelSize tuple? (or just document it as an assumed unit)

  #452 opened a year ago by tlambert03
  6

• .git/objects/pack is huge, consider history rewrite?

  #451 opened a year ago by tlambert03
  13

• channel-z ordering problem when reading lif

  #508 opened a year ago by TomPJWyatt
  7

• same Example_FLIM.lif has 32 bit images in it that aicsimageio cannot read

  #517 opened a year ago by ronnkling
  3

• ome_metadata fro czi file

  #524 opened a year ago by TomPJWyatt
  10

• update gh-actions to fix warnings about deprecated node12 actions

  #525 opened a year ago by toloudis
  0

• current dask no longer supports Python 3.8

  #526 opened a year ago by toloudis
  0

• pydantic user warning on import

  #534 opened a year ago by winnubstj
  0

• `Dimensions` typing

  #520 opened a year ago by multimeric
  2

• tifffile min version incorrect, and now incompatible with bfio extra

  #523 opened a year ago by tlambert03
  6

• OmeZarrWriter: allow user choice of chunk sizes!

  #516 opened a year ago by toloudis
  0

• czi reader is very slow to get channel_names for a large file

  #513 opened a year ago by toloudis
  2

• OmeZarrReader Performance Benchmarks

  #505 opened a year ago by BrianWhitneyAI
  11

• Latest version of aicsimageio cannot read some czi images

  #518 opened 2 years ago by christinab12
  5

• Nikon nd2 file causing error

  #488 opened 2 years ago by toloudis
  3

• does not open the latest leica formats for .lif

  #491 opened 2 years ago by ronnkling
  11

• OmeZarrReader dimension guess for absent field 'axes'

  #503 opened 2 years ago by BrianWhitneyAI
  0

• OmeZarrReader Test with variable dimensions

  #502 opened 2 years ago by BrianWhitneyAI
  0

• OmeZarrReader only has "public data or supply your own creds in env"

  #504 opened 2 years ago by BrianWhitneyAI
  3

• OmeZarrReader physical pixel resolution

  #506 opened 2 years ago by BrianWhitneyAI
  0

• OmeZarrReader redundant testfile

  #501 opened 2 years ago by BrianWhitneyAI
  0

• test aics internal nd2 files

  #490 opened 2 years ago by toloudis
  3

• get_mosaic_tile_position is prohibitively slow

  #482 opened 2 years ago by toloudis
  2

• Getting all mosaic positions at once

  #460 opened 2 years ago by yfukai
  2

• AICSImageIO fails to open OME-TIFF from Fiji which has type RGB

  #457 opened 2 years ago by sebi06
  1

• Do something about xarray version issue

  #475 opened 2 years ago by SeanLeRoy
  3

• current_scene_index() always return 0 when scene_id's are identical across scene

  #447 opened 2 years ago by lukaslcf
  5

• Process TIFF Tags for Metadata on TiffReader

  #450 opened 2 years ago by evamaxfield
  4

• Don't warn when opening ome.tif if bfio is not installed

  #459 opened 2 years ago by anntzer
  1

• Support reading ome-zarr files

  #467 opened 2 years ago by joshua-gould
  2

• XMLSchemaValidationError when reading xml/h5 dataset

  #454 opened 2 years ago by grinic
  12