Issues
- 2
Save downloaded genomes from NCBI
#95 opened by jmtsuji - 5
Alignment file empty
#94 opened by aelbehery - 2
- 3
- 0
- 0
- 0
- 2
GTDB metadata URL change
#88 opened by ThinkPad254 - 3
- 4
Add check for input genome file not having line return after last input genome (renamed by Mike)
#75 opened by Calvin2077 - 6
- 3
Error with pfam_counting.py
#85 opened by SandersonHaley - 2
pfamA.txt.gz missing from ftp?
#84 opened by SandersonHaley - 5
- 2
Unable to continue after **NOTICE**
#83 opened by ReneKat - 2
- 15
Connection issue?
#78 opened by corkdagga - 1
- 4
Alignment file missing
#76 opened by morgansobol - 6
Create a nucleotide alignment
#77 opened by Sidduppal - 6
- 2
Xs in alignment, Error codes in "Finished aligning and formatting gene-set steps"
#53 opened by gkatahon - 2
- 10
Failed to make temporary directory
#46 opened by susheelbhanu - 7
HTTP error with downloading and parsing archaeal and bacteria metadata tables from GTDB
#72 opened by oduwoleiyanu - 9
Bioconda recipe
#68 opened by vinisalazar - 4
Issue with using GTDB
#71 opened by Ahmed-Shibl - 3
- 1
Table with location(s) of SCG markers
#69 opened by gkatahon - 4
Test run error
#67 opened by asuria25 - 3
Problem downloading the Actinobacteria.hmm
#66 opened by oduwoleiyanu - 2
- 4
Same as closed issue #29 - runs successfully but .tre file is empty when using -m flag
#64 opened by kellikmullane - 6
Feature request: subset-GTDB-accession options at family/genus/species level
#63 opened by gabriellerocap - 3
- 5
Alphaproteobacteria (0 targets)
#56 opened by ebervilla - 5
restarting GToTree
#60 opened by nicholascdove - 2
Is this tool suitable for rodents?
#61 opened by kuangzhuoran - 2
Muscle Thread Usage
#59 opened by raufs - 1
- 1
Cleaning Trees with TreeShrink
#54 opened by joshuakirsch - 2
GTDB database update today
#57 opened by Tsingsjeen - 2
duplicate entries
#55 opened by Tsingsjeen - 3
Is this gzip step necessary?
#52 opened by joshuakirsch - 9
- 5
new muscle support
#48 opened by jianshu93 - 5
hmmsearch issue with large target sequence
#50 opened by gavinmdouglas - 5
An option to prevent database version check
#45 opened by felixeye - 4
Alignment not loaded error during Aligning, trimming, and inserting gap-sequences step
#47 opened by MiAiM - 2
fasta file has duplicate entries
#44 opened by ReneKat