Bioconductor/OrchestratingSingleCellAnalysis

Issues

• Typo on Chapter 9.2 PCA, runPCA(..., BSPARAM=RandomParam(), name='')

  #64 opened 2 years ago by estellad
  5

• Problem in downloading LunSpikeInData

  #63 opened 2 years ago by MAmin99m
  7

• DEGs between two scRNA-seq datasets

  #62 opened 3 years ago by kikegoni
  6

• Hello, I'd like to ask you a question.

  #61 opened 3 years ago by 814471489
  2

• any(seqnames(location)=="MT") question

  #60 opened 3 years ago by tiagochst
  2

• Single cell analysis

  #59 opened 3 years ago by pchome61801
  1

• Tagged release OSCA docker images

  #58 opened 4 years ago by matthewcarlucci
  3

• Clean up the introduction section

  #49 opened 4 years ago by LTLA
  0

• Use scDblFinder

  #51 opened 4 years ago by LTLA
  7

• Question about licensing and derivatives

  #56 opened 4 years ago by jma1991
  2

• can not download LunSpikeInData

  #57 opened 4 years ago by YinCY123
  10

• An error occurs when removing swapped molecules

  #55 opened 4 years ago by yeroslaviz
  5

• Fixes to CITE-seq QC section

  #48 opened 4 years ago by LTLA
  1

• Guideline to contribute?

  #50 opened 4 years ago by mdmanurung
  3

• aggregateAcrossCells after fastMNN

  #47 opened 4 years ago by StevenVanLaere
  1

• Operationalize RNA velocity section

  #29 opened 4 years ago by LTLA
  9

• Follow the best practices of Bioconductor containers

  #36 opened 4 years ago by nturaga
  1

• Add the Messmer example for scPCA

  #41 opened 4 years ago by LTLA
  1

• Fix the custom methods for marker detection section

  #43 opened 4 years ago by LTLA
  0

• Need to add some words about the ARI

  #40 opened 4 years ago by LTLA
  1

• Include count-based dimensionality reduction options

  #30 opened 4 years ago by LTLA
  3

• Clean up the multi-sample comparisons chapter

  #33 opened 4 years ago by LTLA
  1

• code can't run successfully in 5th and 6th chapter

  #32 opened 4 years ago by yjm1992312
  3

• Minor notes to self

  #28 opened 5 years ago by LTLA
  1

• Chase up slingshot's generation of lines

  #31 opened 5 years ago by LTLA
  1

• package ‘OSCAUtils’ is not available (for R version 3.6.2)”

  #25 opened 5 years ago by parsboy66
  3

• Figure 5.1 broken link

  #20 opened 5 years ago by johnomics
  4

• Fix the HCA bone marrow chapter

  #15 opened 5 years ago by LTLA
  0

• Fixes to iSEE chapter

  #13 opened 5 years ago by LTLA
  0

• Aaron's weekly todo list

  #8 opened 5 years ago by LTLA
  1

• A more relaxed QC procedure

  #6 opened 5 years ago by LTLA
  1

• Interpretation Figure 7.7 in Chapter 7.4.2 Differential Expression

  #3 opened 5 years ago by tmms1
  2

• Add `## Session Info` at the end of each chapter

  #2 opened 5 years ago by kevinrue
  2