Bondada20

Bondada20's Stars

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k18241620

• nf-core/sarek

  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  Language:Nextflow413136728417

• zhanghao-njmu/SCP

  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

  Language:R410813188

• stemangiola/tidyHeatmap

  Draw heatmap simply using a tidy data frame

  Language:R32575823

• pcingola/SnpEff

  Language:Java2582651181

• hartwigmedical/hmftools

  Various algorithms for analysing genomics data

  Language:Java2001947460

• ncborcherding/escape

  Easy single cell analysis platform for enrichment

  Language:R155311020

• RausellLab/CelliD

  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.

  Language:R9282119

• saezlab/CollecTRI

  Gene regulatory network containing signed transcription factor-target gene interactions

  Language:R677176

• GangLiLab/genekitr

  🧬 Gene analysis toolkit based on R

  Language:R543257

• mourisl/T1K

  T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.

  Language:C548358

• cellatlas/human

  Language:Jupyter Notebook404106

• czbiohub-sf/tabula-sapiens

  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens

  Language:Jupyter Notebook406258

• Single-Cell-Genomics-Group-CNAG-CRG/TonsilAtlas

  Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)

  Language:HTML26552

• aliceygao/pan-Fibroblast

  Language:R251111

• ncborcherding/ccRCC

  Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma

  Language:PostScript20256

• dzhakparov/GeneSelectR

  Language:HTML191281

• chloelulu/scMayoMap

  Language:R18265

• Mathbiomed/scLENS

  Data-driven signal detection for unbiased scRNA-seq data analysis

  Language:Julia14021

• alexcoulton/macrophage-atlas

  Language:R9202

• SL-Genomics/Longitudinal_pAML_paper

  Language:R8102

• wang-lab/IMAPR

  Language:Prolog7231

• JimmyVdEynden/immunoediting

  Language:HTML400

• xiaoyu12/Combat-ref

  ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data

  Language:R4210

• abbaslab/2023_Single-Cell-CD8-Profiling-in-AML

  Language:R3300

• theMMRF/MMRF_ImmuneAtlas

  Repository for Immune Atlas Research Consortium at MMRF for storing research project code

  Language:HTML300

• UMCUGenetics/Genetic-Immune-Escape

  Source code of the manuscript "Genetic immune escape landscape in primary and metastatic tumors"

  Language:Jupyter Notebook340

• madilabcode/interFLOW

  Language:Python2000

• KochInstitute-Bioinformatics/Ramos_Koch_Leuk

  Ramos, Koch et al., leukemia genome-wide crispr screen: primary and validation screen count data and mageck testing

  Language:HTML10

• shawlab-moffitt/CSEminer-manuscript

  Language:Shell1301