CSBiology/BioFSharp

Issues

• [Docs] Was image created by mermaid?

  #135 opened 10 months ago by Fxplorer
  1

• [BUG] Using pretty printers on BioSeq after translation results in an empty source sequence

  #122 opened 3 years ago by kMutagene
  5

• [Feature Request] Addition of adjusted PValues to GSEA Result

  #134 opened 2 years ago by bvenn
  0

• [BUG] Hypergeometric Distribution CDF update will change input

  #132 opened 3 years ago by Freymaurer
  0

• [Feature Request] OBO parser improvements

  #131 opened 3 years ago by HLWeil
  0

• [BUG] Pairwise alignment does not correctly handle gap opening costs

  #130 opened 3 years ago by HLWeil
  0

• OBO parser verbosity

  #128 opened 3 years ago by bvenn
  0

• Ontology enrichment field name need revision

  #124 opened 3 years ago by bvenn
  0

• [BUG] ClustalO wrapper example from the docs is not working correctly

  #116 opened 4 years ago by kMutagene
  8

• [Feature Request] Add more Proteases

  #120 opened 4 years ago by ZimmerD
  0

• [Feature Request] Update or move dppop

  #119 opened 4 years ago by kMutagene
  0

• [BUG] Obo.parseOboTerms too strict about parsing whitespace

  #118 opened 4 years ago by Freymaurer
  0

• [Feature Request] Seamless phylogenetic tree building from sequences using ClustalO wrapper

  #117 opened 4 years ago by HLWeil
  0

• [Feature Request] Rework alignment

  #61 opened 5 years ago by HLWeil
  2

• [BUG] Wrong versions in nuget packages built with Paket.pack

  #71 opened 4 years ago by kMutagene
  1

• BioFSharp Project rejuvenation

  #112 opened 4 years ago by kMutagene
  0

• [BUG] Fasta writer EOL may cause downstream tools being unable to parse the fasta

  #113 opened 4 years ago by kMutagene
  0

• [BUG] BioFSharp.IO.Obo.parseOboTerms parsing error with ':'

  #111 opened 4 years ago by Freymaurer
  0

• [Docs] Some formatted outputs are missing

  #67 opened 5 years ago by kMutagene
  2

• [Feature Request] Move tests to .net core

  #90 opened 4 years ago by kMutagene
  1

• [Docs] Reference to FastA Histrogram is incorrect

  #96 opened 5 years ago by bvenn
  1

• [Feature Request] Add installation procedure to Readme

  #105 opened 4 years ago by ZimmerD
  0

• [Feature Request] Rework ModificationInfo's implementation of IBioItem

  #104 opened 4 years ago by kMutagene
  0

• [BUG] Include all possible bin sizes within GSEA (0 and 1)

  #102 opened 4 years ago by bvenn
  0

• [Feature Request] Complete Digestion module

  #97 opened 5 years ago by ZimmerD
  1

• [Feature Request]Rework BioCollections

  #95 opened 5 years ago by kMutagene
  0

• [Feature Request]Extend OBO parser to fully support the obo flat file 1.4 specifications

  #94 opened 5 years ago by kMutagene
  0

• [BUG]OBO parser skips all relationships but the last

  #93 opened 5 years ago by kMutagene
  3

• [Feature Request]Add Entrez query builder

  #92 opened 5 years ago by kMutagene
  0

• [Feature Request]Implement Entrez query construction and databases queries

  #84 opened 5 years ago by kMutagene
  0

• [Feature Request] Add high-level functionality for Entrez cgi DSLs

  #87 opened 5 years ago by kMutagene
  0

• [BUG] BioContainer STDOut is not attached to FSI, only gets returned when container tasks are finished/aborted

  #85 opened 5 years ago by kMutagene
  0

• [Feature Request] Optimize Sailent to increase computation speed

  #75 opened 5 years ago by kMutagene
  3

• Addition of tools for statistical analysis of biological sequences

  #50 opened 6 years ago by Etschbeijer
  0

• [Feature Request] Improve Formula parsing/printing consistency

  #62 opened 5 years ago by kMutagene
  0

• [Docs] Add ImgP docs

  #57 opened 6 years ago by kMutagene
  0

• [Docs] Add BioTools docs

  #54 opened 5 years ago by kMutagene
  0

• Add most important BioTools docker APIs for 1.0.0

  #55 opened 6 years ago by kMutagene
  1

• [Feature Request] Move to new and simplified dotnet build process

  #77 opened 5 years ago by kMutagene
  0

• [Feature Request]Replace deprecated FAKE calls in the build script

  #70 opened 5 years ago by kMutagene
  1

• [Feature Request] Increase verbosity of Sailent.compute

  #74 opened 5 years ago by ZimmerD
  5

• [Feature Request] Automatically take care if Image exists with correct tag for biocontainers

  #73 opened 5 years ago by kMutagene
  0

• [BUG]SOFT Parser skips entities

  #72 opened 5 years ago by kMutagene
  1

• [BUG] Paket.exe missing when building on a clean(with all necessary frameworks and tools) machine

  #68 opened 5 years ago by kMutagene
  1

• [BUG] Nucleotides.antiparallel delivers unexpected results

  #66 opened 5 years ago by rolfsuter
  3

• [Docs] Clarify Nucleotides.inverse function

  #65 opened 5 years ago by rolfsuter
  3

• [Feature Request] Documentation for Ontology Enrichment

  #58 opened 5 years ago by Freymaurer
  1

• [Docs] Add BioFSharp.ML docs

  #56 opened 6 years ago by kMutagene
  0

• [BUG] FastA-Writer appends to file instead of recreating it

  #52 opened 6 years ago by bvenn
  1

• Should 'release' build target require confirmation?

  #49 opened 6 years ago by bvenn
  1